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Updated format for notebooks and solved notebooks #6

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Jun 30, 2025
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Updated format for notebooks and solved notebooks #6

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -24,7 +24,7 @@ Install the following packages in the newly created environment.
```
conda activate scale-up

conda install -c conda-forge "cellpose>=3.0,<4.0" tifffile<2025.6.11 "zarr>=2.0,<3.0" dask=2025.5.1 distributed=2025.5.1 dask-image=2024.5.3 imagecodecs=2025.3.30
conda install -c conda-forge "cellpose>=3.0,<4.0" "tifffile<2025.6.11" "zarr>=2.0,<3.0" dask=2025.5.1 distributed=2025.5.1 dask-image=2024.5.3 imagecodecs=2025.3.30
```

We'll open some image files that are compressed using `JPEG2000`, so we need `imagecodecs` to have access to this compression algorithm.
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16 changes: 13 additions & 3 deletions _toc.yml
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Expand Up @@ -3,6 +3,16 @@

format: jb-book
root: README
chapters:
- file: notebooks/Zarr_and_Dask_for_large-scale_imaging-Part-1.ipynb
- file: notebooks/Zarr_and_Dask_for_large-scale_imaging-Part-2.ipynb
parts:
- caption: Notebooks
chapters:
- file: notebooks/Zarr_and_Dask_for_large-scale_imaging-Part-1.ipynb
title: Part 1
- file: notebooks/Zarr_and_Dask_for_large-scale_imaging-Part-2.ipynb
title: Part 2
- caption: Solved notebooks
chapters:
- file: notebooks/Solved_Zarr_and_Dask_for_large-scale_imaging-Part-1.ipynb
title: Part 1
- file: notebooks/Solved_Zarr_and_Dask_for_large-scale_imaging-Part-2.ipynb
title: Part 2
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