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GenerateProfile.sh: Generate PSSM profile from fasta file (convert to MSA) and run RPSBLAST to test.
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MakeNewPSSM.sh: generate PSSM profile from fasta with added sequences from ToxProt database. The MSA created can be Probcons, Clustalo or MAFFT.
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run_toxprot.sh: Run tool PSIBLAST vs ToxProt database and remove redundancy with CDHIT.
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changeheader.py: Change header names of fasta file to standardize file as "protein|species_of_origin|number"
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changeheaderIP.py: Change header names of fasta file to standardize file for InterproScan (IP) analysis as "protein|species_of_origin|database_of_origin|family_name|number"
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createtable.py: Generate tsv file with information of protein id, species and domains found in InterproScan.
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generate_table.py: Generate tsv with information from prediction of proteins (TransDecoder longorfs), classification of toxins (ArachnoFamTox), prediction of signal peptide (SignalP), Transcritps per million kilo bases (TPM - RSEM) and identification of toxins performed by BLASTp vs ToxProt database.
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parsehmmscan.py: Parse HMMSCAN 3 DomTab output.
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