…e_attr_err

[22.01] Fix maintenance script bug

for has_n_columns

follow up on galaxyproject#12528

Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>

for previously connected step that should still be mapped over.

[22.01] add security checks to page and visualization APIs

We should track this in a finer grained way maybe,
but it'll work. This fixes displaying the right inferred
collection source type when you change connections.

This PR fixes tool recommendation galaxyproject#15723 partially, only in the workflow editor

allows toggling Recommendations using v-if

…n_columns_comment

[22.01] xsd: add forgotten comment attribute

xref
https://github.blog/2023-03-23-we-updated-our-rsa-ssh-host-key/

Should fix galaxyproject#15211

…ort-patch-3

[23.0] Fix tool recommendation in the workflow editor

Merge 22.01 -> 22.05

[23.0] Update Gravity to 1.0.2

metadata changes

Remove duplicate dataset entries in Collections

… some containers to attempt to use galaxy's python dependencies which are unavailable to batch, instead of container-installed dependencies as appropriate

[23.0] Find correct collection type if collection_type_source points at input of "any" collection type

…_fix

[22.05] Backport galaxyproject#15858: Fix anonymous user uploads when vault is configured

Tools may check for `is_of_type` if optional datasets to determine if
the dataset has been provided.

We should probably also drop the `tool` and `name` arguments that aren't
consumed anywhere.

[23.0] Don't set datatype for optional datasets that were not provided

[23.0] AWS Batch python dependency bugfix

Co-authored-by: David López <46503462+davelopez@users.noreply.github.com>

Co-authored-by: David López <46503462+davelopez@users.noreply.github.com>

…iles-api-fix-for-22.05

[22.05] Backport cast job_key to string galaxyproject#15578

Fixes galaxyproject#15512

Simplifies encoding/decoding of IDs and prevents exposure issues

…ansparent

[23.0] Make dragImage transparent in workflow editor

[23.0] Fix Invocation RO-Crate metadata

Fixes galaxyproject#15878.
I don't love it, but the endpoint is paginated, and if we want
to show tags in the summary view I think we have to do this.

…n_view

[23.0] List tags in ``/api/dataset_collections/{hdca_id}/contents/{parent_id}``

…n_errors

[22.05] Remove some IDs from error messages

otherwise `container_description.identifier = cache_path` (at the end of the function)
will modify the original (i.e. the tools) container description which influences
i.e. (may break) successive container resolutions.

…_explicit_singularity_container_description

[22.01] cached_explicit_singularity: needs to copy container description

…ok-z-index

[23.0] Fix tool bar on top of pop-ups

…_archive_extension

[23.0] Fix short term storage archive export extension on download

…1_22.05

[22.05] merge 22.01

Co-authored-by: Laila Los <44241786+ElectronicBlueberry@users.noreply.github.com>