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Updates to Interactive Environment docs #2543

Merged
merged 6 commits into from
Jul 21, 2016
Merged

Updates to Interactive Environment docs #2543

merged 6 commits into from
Jul 21, 2016

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pvanheus
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Add updates to the Interactive Environment docs and split out the docs on writing IEs to developer documentation.

@galaxybot galaxybot added this to the 16.07 milestone Jun 25, 2016
@hexylena hexylena self-assigned this Jun 25, 2016
docker containers. Once this container is launched, we notify a proxy built
into Galaxy which helps coordinate a 1:1 mapping of users and their docker containers.
component. Galaxy vizualisation plugins are rendered using Mako templates and
Mako templates in turn can run Python code. This Python code in the Mako templates
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"code. This" -> "code. GIEs build upon visualization plugins, adding features to allow for container management and proxying. This"

@hexylena
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Also you'll need to mention this in docs/dev/index.rst or something, I think

location /galaxy/gie_proxy/ipython/api/kernels {
proxy_pass http://localhost:8800/galaxy/gie_proxy/ipython/api/kernels;
location ~ ^/galaxy/gie_proxy/jupyter/(?<nbtype>[^/]+)/api/kernels(?<rest>.*?)$ {
proxy_pass http://localhost:8800/galaxy/gie_proxy/$nbtype/api/kernels$rest;
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@bgruening, @pvanheus says this is correct and I believe him, but just wanted a second opinion :)

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After @bgruening replies, ready to merge

@@ -3,21 +3,23 @@ Galaxy Interactive Environments (GIEs)

GIEs were a new feature back in Galaxy 15.05, leading with the release of the
IPython IE. They were presented at GCC2015, and the RStudio IE was released as
part of 15.07.
part of 15.07. The IPython IE was superceded by a Project Jupyter IE in
Galaxy XXXXX.
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16.01

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ping @pvanheus
Thanks for enhancing it!

@jmchilton jmchilton merged commit 8b324e8 into galaxyproject:dev Jul 21, 2016
@jmchilton
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Awesome - thanks for the continued improvements to docs @pvanheus!

nsoranzo added a commit to nsoranzo/galaxy that referenced this pull request Oct 24, 2016
nsoranzo added a commit to nsoranzo/galaxy that referenced this pull request Oct 24, 2016
nsoranzo added a commit to nsoranzo/galaxy that referenced this pull request Oct 24, 2016
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5 participants