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v7.4.0

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@github-actions github-actions released this 14 Oct 19:57
· 1 commit to main since this release
9356e4b

Other Changes

  • Rewrite AI-writing tropes in README and docs (f958561)
  • Restore claims changed by the tropes rewrite (0d7f3a1)
  • Fold short verdict sentences into their neighbours (765371d)
  • Restore wording the tropes rewrite changed without a trope (3a93077)
  • State the section's finding in vague headings (fc9c317)
  • Trim README wordiness, defer detail to docs/ (8b9171a)
  • Restore words dropped from the breakends sentence (caeae6a)
  • Trim docs: point optimizations.md at api.md instead of restating it (8d47923)
  • Restore the api.md sentence naming the column fields (3c739ba)
  • Fix the reserved INFO types for CIGAR and MQ (3e5b012)
  • Skip empty INFO pairs instead of reporting an empty key (5e2bf7e)
  • Honour quoted escapes and quoted brackets in header meta values (cb2243f)
  • Drop malformed LAA entries whole in both readers (86c26b1)
  • Share the FORMAT column lookup between the two genotype scanners (e693f11)
  • Fold the duplicated local-allele property descriptor into a helper (27d6026)
  • Deep-copy the reserved header fields per parser (7e92d36)
  • Drop spec comments that sat above the wrong reserved field (82f7fe8)
  • Treat only " and \ as escapes in quoted header values (fa3d8f2)
  • Update two comments the scanner refactor left stale (e92f287)
  • Make reserved INFO MQ a Float and write Number=. as '.' (347549f)
  • Build the reserved header fields with a factory, not structuredClone (21ec8f3)
  • Read an empty list item as missing rather than zero (2fd8832)
  • Keep a malformed LAA entry's slot instead of dropping it (c8bd7e3)
  • Fall back to literal backslashes when escapes leave a quote open (06cb7da)
  • Keep cross-module calls and per-call allocations out of the scanners (bc00167)
  • Track readLocalAlleles' entry state in one variable (ccfd81c)
  • Benchmark every per-line and per-sample path between two refs (6d4adc7)

Full changelog: v7.3.0...v7.4.0