chore(deps): update all dependencies

[renovate-bot]

This PR contains the following updates:

Package	Change	Age	Adoption	Passing	Confidence
alembic (changelog)	==1.7.5 -> ==1.7.6
charset-normalizer	==2.0.10 -> ==2.0.12
click (changelog)	==8.0.3 -> ==8.0.4
geoalchemy2 (source)	==0.10.2 -> ==0.11.0
google-api-core	==2.4.0 -> ==2.6.0
google-auth	==2.3.3 -> ==2.6.0
google-cloud-bigquery	==2.32.0 -> ==2.34.1
google-cloud-core	==2.2.1 -> ==2.2.2
google-resumable-media	==2.1.0 -> ==2.3.1
googleapis-common-protos	==1.54.0 -> ==1.55.0
grpcio	==1.43.0 -> ==1.44.0
grpcio-status	==1.43.0 -> ==1.44.0
markupsafe (changelog)	==2.0.1 -> ==2.1.0
proto-plus	==1.19.8 -> ==1.20.3
protobuf	==3.19.3 -> ==3.19.4
pyparsing	==3.0.6 -> ==3.0.7
pytest (source, changelog)	==6.2.5 -> ==7.0.1
pytest-flake8	==1.0.7 -> ==1.1.0
shapely	==1.8.0 -> ==1.8.1.post1
sqlalchemy (changelog)	>=1.2.0,<=1.4.27 -> >=1.4.31,<=1.4.31
sqlalchemy (changelog)	==1.4.26 -> ==1.4.31
typing-extensions	==4.0.1 -> ==4.1.1

---

Release Notes

ousret/charset_normalizer

v2.0.12

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Fixed

• ASCII miss-detection on rare cases (PR #​170)

v2.0.11

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Added

• Explicit support for Python 3.11 (PR #​164)

Changed

• The logging behavior have been completely reviewed, now using only TRACE and DEBUG levels (PR #​163 #​165)

geoalchemy/geoalchemy2

v0.11.0

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• Add Alembic helpers for Add/Drop spatial columns with SQLite @​adrien-berchet (#​362)
• Add GitHub URL for PyPi @​andriyor (#​364)
• Add a simple API to register custom mapping for SQLite function names @​adrien-berchet (#​360)
• Example of specific compilation for sided buffer with SQLite dialect @​adrien-berchet (#​361)
• Remove metaclass as in SQLAlchemy, rework the tests and some reformatting @​adrien-berchet (#​357)
• Use RecoverGeometryColumn instead of AddGeometryColumn with SQLite @​adrien-berchet (#​354)
• Fix spatial index declaration @​adrien-berchet (#​344)

googleapis/python-api-core

v2.6.0

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Features

• initial support for Extended Operations (#​344) (021bb7d)

v2.5.0

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Features

• add api_key to client options (#​248) (5e5ad37)

Bug Fixes

• deps: remove setuptools from dependencies (#​339) (c782f29)

Documentation

• fix typo in library name (#​332) (f267111)

googleapis/google-auth-library-python

v2.6.0

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Features

• ADC can load an impersonated service account credentials. (#​962) (52c8ef9)

Bug Fixes

• revert "feat: add api key support (#​826)" (#​964) (f9f23f4)

v2.5.0

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Features

• ADC can load an impersonated service account credentials. (#​956) (a8eb4c8)

2.4.1 (2022-01-21)

Bug Fixes

• urllib3 import (#​953) (c8b5cae)

v2.4.1

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v2.4.0

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Features

• add 'py.typed' declaration (#​919) (c993504)
• add api key support (#​826) (3b15092)

Bug Fixes

• deps: allow cachetools 5.0 for python 3.7+ (#​937) (1eae37d)
• fix the message format for metadata server exception (#​916) (e756f08)

Documentation

• fix intersphinx link for 'requests-oauthlib' (#​921) (967be4f)
• note ValueError in verify_oauth2_token (#​928) (82bc5f0)

2.3.3 (2021-11-01)

Bug Fixes

• add fetch_id_token_credentials (#​866) (8f1e9cf)
• fix error in sign_bytes (#​905) (ef31284)
• use 'int.to_bytes' and 'int.from_bytes' for py3 (#​904) (bd0ccc5)

2.3.2 (2021-10-26)

Bug Fixes

• add clock_skew_in_seconds to verify_token functions (#​894) (8e95c1e)

2.3.1 (2021-10-21)

Bug Fixes

• add back python 2.7 for gcloud usage only (#​892) (5bd5ccf)

Documentation

• Fix formatting of GCE_METADATA_HOST (#​890) (e2b3c98)

googleapis/python-bigquery

v2.34.1

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v2.34.0

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Features

• support BI Engine statistics in query job (#​1144) (7482549)

v2.33.0

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Features

• add --no_query_cache option to %%bigquery magics to disable query cache (#​1141) (7dd30af)

Bug Fixes

• return 403 when VPC-SC violation happens (#​1131) (f5daa9b)

Documentation

• reference BigQuery REST API defaults in LoadJobConfig descrip… (#​1132) (18d9580)
• show common job properties in get_job and cancel_job samples (#​1137) (8edc10d)

googleapis/python-cloud-core

v2.2.2

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googleapis/google-resumable-media-python

v2.3.1

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v2.3.0

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Features

• safely resume interrupted downloads (#​294) (b363329)

2.2.1 (2022-02-09)

Bug Fixes

• don't overwrite user-agent on requests (42b380e)

v2.2.1

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v2.2.0

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Features

• add 'py.typed' declaration file (#​287) (cee4164)
• add support for signed resumable upload URLs (#​290) (e1290f5)

Bug Fixes

• add user-agent on requests (#​295) (e107a0c)

googleapis/python-api-common-protos

v1.55.0

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Features

• add location proto files. (#​84) (9a33e56)

googleapis/proto-plus-python

v1.20.3

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v1.20.2

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v1.20.1

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v1.20.0

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Features

• add custom dir for messages and message classes (#​289) (35e019e)

Bug Fixes

• workaround for buggy pytest (#​291) (28aa3b2)

1.19.9 (2022-01-25)

Bug Fixes

• add pickling support to proto messages (#​280) (2b7be35)

1.19.8 (2021-11-09)

Documentation

• fix typos (#​277) (e3b71e8)

1.19.7 (2021-10-27)

Bug Fixes

• restore allowing None as value for stringy ints (#​272) (a8991d7)

1.19.6 (2021-10-25)

Bug Fixes

• setting 64bit fields from strings supported (#​267) (ea7b911)

1.19.5 (2021-10-11)

Documentation

• Clarify semantics of multiple oneof variants passed to msg ctor (#​263) (6f8a5b2)

1.19.4 (2021-10-08)

Documentation

• clarify that proto plus messages are not pickleable (#​260) (6e691dc)

1.19.3 (2021-10-07)

Bug Fixes

• setting bytes field from python string base64 decodes before assignment (#​255) (b6f3eb6)

1.19.2 (2021-09-29)

Bug Fixes

• ensure enums are hashable (#​252) (232341b)

1.19.1 (2021-09-29)

Bug Fixes

• ensure enums are incomparable w other enum types (#​248) (5927c14)

v1.19.9

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pyparsing/pyparsing

v3.0.7

• Fixed bug #​345, in which delimitedList changed expressions in place
  using expr.streamline(). Reported by Kim Gräsman, thanks!

• Fixed bug #​346, when a string of word characters was passed to WordStart
  or WordEnd instead of just taking the default value. Originally posted
  as a question by Parag on StackOverflow, good catch!

• Fixed bug #​350, in which White expressions could fail to match due to
  unintended whitespace-skipping. Reported by Fu Hanxi, thank you!

• Fixed bug #​355, when a QuotedString is defined with characters in its
  quoteChar string containing regex-significant characters such as ., *,
  ?, [, ], etc.

• Fixed bug in ParserElement.run_tests where comments would be displayed
  using with_line_numbers.

• Added optional "min" and "max" arguments to delimited_list. PR
  submitted by Marius, thanks!

• Added new API change note in whats_new_in_pyparsing_3_0_0, regarding
  a bug fix in the bool() behavior of ParseResults.

  Prior to pyparsing 3.0.x, the ParseResults class implementation of
  __bool__ would return False if the ParseResults item list was empty,
  even if it contained named results. In 3.0.0 and later, ParseResults will
  return True if either the item list is not empty or if the named
  results dict is not empty.

generate an empty ParseResults by parsing a blank string with

a ZeroOrMore

  result = Word(alphas)[...].parse_string("")
  print(result.as_list())
  print(result.as_dict())
  print(bool(result))

add a results name to the result

  result["name"] = "empty result"
  print(result.as_list())
  print(result.as_dict())
  print(bool(result))

Prints:

  []
  {}
  False

  []
  {'name': 'empty result'}
  True

In previous versions, the second call to bool() would return False.

• Minor enhancement to Word generation of internal regular expression, to
  emit consecutive characters in range, such as "ab", as "ab", not "a-b".

• Fixed character ranges for search terms using non-Western characters
  in booleansearchparser, PR submitted by tc-yu, nice work!

• Additional type annotations on public methods.

pytest-dev/pytest

v7.0.1

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pytest 7.0.1 (2022-02-11)

Bug Fixes

• #​9608: Fix invalid importing of importlib.readers in Python 3.9.
• #​9610: Restore [UnitTestFunction.obj]{.title-ref} to return unbound rather than bound method.
  Fixes a crash during a failed teardown in unittest TestCases with non-default [__init__]{.title-ref}.
  Regressed in pytest 7.0.0.
• #​9636: The pythonpath plugin was renamed to python_path. This avoids a conflict with the pytest-pythonpath plugin.
• #​9642: Fix running tests by id with :: in the parametrize portion.
• #​9643: Delay issuing a ~pytest.PytestWarning{.interpreted-text role="class"} about diamond inheritance involving ~pytest.Item{.interpreted-text role="class"} and
  ~pytest.Collector{.interpreted-text role="class"} so it can be filtered using standard warning filters <warnings>{.interpreted-text role="ref"}.

v7.0.0

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pytest 7.0.0 (2022-02-03)

(Please see the full set of changes for this release also in the 7.0.0rc1 notes below)

Deprecations

• #​9488: If custom subclasses of nodes like pytest.Item{.interpreted-text role="class"} override the
  __init__ method, they should take **kwargs. See
  uncooperative-constructors-deprecated{.interpreted-text role="ref"} for details.

  Note that a deprection warning is only emitted when there is a conflict in the
  arguments pytest expected to pass. This deprecation was already part of pytest
  7.0.0rc1 but wasn't documented.

Bug Fixes

• #​9355: Fixed error message prints function decorators when using assert in Python 3.8 and above.
• #​9396: Ensure pytest.Config.inifile{.interpreted-text role="attr"} is available during the pytest_cmdline_main <_pytest.hookspec.pytest_cmdline_main>{.interpreted-text role="func"} hook (regression during 7.0.0rc1).

Improved Documentation

• #​9404: Added extra documentation on alternatives to common misuses of [pytest.warns(None)]{.title-ref} ahead of its deprecation.
• #​9505: Clarify where the configuration files are located. To avoid confusions documentation mentions
  that configuration file is located in the root of the repository.

Trivial/Internal Changes

• #​9521: Add test coverage to assertion rewrite path.

pytest 7.0.0rc1 (2021-12-06)

Breaking Changes

• #​7259: The Node.reportinfo() <non-python tests>{.interpreted-text role="ref"} function first return value type has been expanded from [py.path.local | str]{.title-ref} to [os.PathLike[str] | str]{.title-ref}.

  Most plugins which refer to [reportinfo()]{.title-ref} only define it as part of a custom pytest.Item{.interpreted-text role="class"} implementation.
  Since [py.path.local]{.title-ref} is a [os.PathLike[str]]{.title-ref}, these plugins are unaffacted.

  Plugins and users which call [reportinfo()]{.title-ref}, use the first return value and interact with it as a [py.path.local]{.title-ref}, would need to adjust by calling [py.path.local(fspath)]{.title-ref}.
  Although preferably, avoid the legacy [py.path.local]{.title-ref} and use [pathlib.Path]{.title-ref}, or use [item.location]{.title-ref} or [item.path]{.title-ref}, instead.

  Note: pytest was not able to provide a deprecation period for this change.

• #​8246: --version now writes version information to stdout rather than stderr.

• #​8733: Drop a workaround for pyreadline that made it work with --pdb.

  The workaround was introduced in #​1281 in 2015, however since then
  pyreadline seems to have gone unmaintained, is generating
  warnings, and will stop working on Python 3.10.

• #​9061: Using pytest.approx{.interpreted-text role="func"} in a boolean context now raises an error hinting at the proper usage.

  It is apparently common for users to mistakenly use pytest.approx like this:

  assert pytest.approx(actual, expected)
  

  While the correct usage is:

  assert actual == pytest.approx(expected)
  

  The new error message helps catch those mistakes.

• #​9277: The pytest.Instance collector type has been removed.
  Importing pytest.Instance or _pytest.python.Instance returns a dummy type and emits a deprecation warning.
  See instance-collector-deprecation{.interpreted-text role="ref"} for details.

• #​9308: PytestRemovedIn7Warning deprecation warnings are now errors by default.

  Following our plan to remove deprecated features with as little disruption as
  possible, all warnings of type PytestRemovedIn7Warning now generate errors
  instead of warning messages by default.

  The affected features will be effectively removed in pytest 7.1, so please consult the
  deprecations{.interpreted-text role="ref"} section in the docs for directions on how to update existing code.

  In the pytest 7.0.X series, it is possible to change the errors back into warnings as a
  stopgap measure by adding this to your pytest.ini file:

  [pytest]
  filterwarnings =
      ignore::pytest.PytestRemovedIn7Warning
  

  But this will stop working when pytest 7.1 is released.

  If you have concerns about the removal of a specific feature, please add a
  comment to 9308{.interpreted-text role="issue"}.

Deprecations

• #​7259: py.path.local arguments for hooks have been deprecated. See the deprecation note <legacy-path-hooks-deprecated>{.interpreted-text role="ref"} for full details.

  py.path.local arguments to Node constructors have been deprecated. See the deprecation note <node-ctor-fspath-deprecation>{.interpreted-text role="ref"} for full details.

  ::: {.note}
  ::: {.admonition-title}
  Note
  :::

  The name of the ~_pytest.nodes.Node{.interpreted-text role="class"} arguments and attributes (the
  new attribute being path) is the opposite of the situation for hooks
  (the old argument being path).

  This is an unfortunate artifact due to historical reasons, which should be
  resolved in future versions as we slowly get rid of the py{.interpreted-text role="pypi"}
  dependency (see 9283{.interpreted-text role="issue"} for a longer discussion).
  :::

• #​7469: Directly constructing the following classes is now deprecated:

  • _pytest.mark.structures.Mark
  • _pytest.mark.structures.MarkDecorator
  • _pytest.mark.structures.MarkGenerator
  • _pytest.python.Metafunc
  • _pytest.runner.CallInfo
  • _pytest._code.ExceptionInfo
  • _pytest.config.argparsing.Parser
  • _pytest.config.argparsing.OptionGroup
  • _pytest.pytester.HookRecorder

  These constructors have always been considered private, but now issue a deprecation warning, which may become a hard error in pytest 8.

• #​8242: Raising unittest.SkipTest{.interpreted-text role="class"} to skip collection of tests during the
  pytest collection phase is deprecated. Use pytest.skip{.interpreted-text role="func"} instead.

  Note: This deprecation only relates to using unittest.SkipTest{.interpreted-text role="class"} during test
  collection. You are probably not doing that. Ordinary usage of
  unittest.SkipTest{.interpreted-text role="class"} / unittest.TestCase.skipTest{.interpreted-text role="meth"} /
  unittest.skip{.interpreted-text role="func"} in unittest test cases is fully supported.

• #​8315: Several behaviors of Parser.addoption <pytest.Parser.addoption>{.interpreted-text role="meth"} are now
  scheduled for removal in pytest 8 (deprecated since pytest 2.4.0):

  • parser.addoption(..., help=".. %default ..") - use %(default)s instead.
  • parser.addoption(..., type="int/string/float/complex") - use type=int etc. instead.

• #​8447: Defining a custom pytest node type which is both an pytest.Item <Item>{.interpreted-text role="class"} and a pytest.Collector <Collector>{.interpreted-text role="class"} (e.g. pytest.File <File>{.interpreted-text role="class"}) now issues a warning.
  It was never sanely supported and triggers hard to debug errors.

  See the deprecation note <diamond-inheritance-deprecated>{.interpreted-text role="ref"} for full details.

• #​8592: pytest_cmdline_preparse{.interpreted-text role="hook"} has been officially deprecated. It will be removed in a future release. Use pytest_load_initial_conftests{.interpreted-text role="hook"} instead.

  See the deprecation note <cmdline-preparse-deprecated>{.interpreted-text role="ref"} for full details.

• #​8645: pytest.warns(None) <pytest.warns>{.interpreted-text role="func"} is now deprecated because many people used
  it to mean "this code does not emit warnings", but it actually had the effect of
  checking that the code emits at least one warning of any type - like pytest.warns()
  or pytest.warns(Warning).

• #​8948: pytest.skip(msg=...) <pytest.skip>{.interpreted-text role="func"}, pytest.fail(msg=...) <pytest.fail>{.interpreted-text role="func"} and pytest.exit(msg=...) <pytest.exit>{.interpreted-text role="func"}
  signatures now accept a reason argument instead of msg. Using msg still works, but is deprecated and will be removed in a future release.

  This was changed for consistency with pytest.mark.skip <pytest.mark.skip>{.interpreted-text role="func"} and pytest.mark.xfail <pytest.mark.xfail>{.interpreted-text role="func"} which both accept
  reason as an argument.

• #​8174: The following changes have been made to types reachable through pytest.ExceptionInfo.traceback{.interpreted-text role="attr"}:

  • The path property of _pytest.code.Code returns Path instead of py.path.local.
  • The path property of _pytest.code.TracebackEntry returns Path instead of py.path.local.

  There was no deprecation period for this change (sorry!).

Features

• #​5196: Tests are now ordered by definition order in more cases.

  In a class hierarchy, tests from base classes are now consistently ordered before tests defined on their subclasses (reverse MRO order).

• #​7132: Added two environment variables PYTEST_THEME{.interpreted-text role="envvar"} and PYTEST_THEME_MODE{.interpreted-text role="envvar"} to let the users customize the pygments theme used.

• #​7259: Added cache.mkdir() <pytest.Cache.mkdir>{.interpreted-text role="meth"}, which is similar to the existing cache.makedir() <pytest.Cache.makedir>{.interpreted-text role="meth"},
  but returns a pathlib.Path{.interpreted-text role="class"} instead of a legacy py.path.local.

  Added a paths type to parser.addini() <pytest.Parser.addini>{.interpreted-text role="meth"},
  as in parser.addini("mypaths", "my paths", type="paths"),
  which is similar to the existing pathlist,
  but returns a list of pathlib.Path{.interpreted-text role="class"} instead of legacy py.path.local.

• #​7469: The types of objects used in pytest's API are now exported so they may be used in type annotations.

  The newly-exported types are:

  • pytest.Config for Config <pytest.Config>{.interpreted-text role="class"}.
  • pytest.Mark for marks <pytest.Mark>{.interpreted-text role="class"}.
  • pytest.MarkDecorator for mark decorators <pytest.MarkDecorator>{.interpreted-text role="class"}.
  • pytest.MarkGenerator for the pytest.mark <pytest.MarkGenerator>{.interpreted-text role="class"} singleton.
  • pytest.Metafunc for the metafunc <pytest.MarkGenerator>{.interpreted-text role="class"} argument to the pytest_generate_tests{.interpreted-text role="hook"} hook.
  • pytest.CallInfo for the CallInfo <pytest.CallInfo>{.interpreted-text role="class"} type passed to various hooks.
  • pytest.PytestPluginManager for PytestPluginManager <pytest.PytestPluginManager>{.interpreted-text role="class"}.
  • pytest.ExceptionInfo for the ExceptionInfo <pytest.ExceptionInfo>{.interpreted-text role="class"} type returned from pytest.raises{.interpreted-text role="func"} and passed to various hooks.
  • pytest.Parser for the Parser <pytest.Parser>{.interpreted-text role="class"} type passed to the pytest_addoption{.interpreted-text role="hook"} hook.
  • pytest.OptionGroup for the OptionGroup <pytest.OptionGroup>{.interpreted-text role="class"} type returned from the parser.addgroup <pytest.Parser.getgroup>{.interpreted-text role="func"} method.
  • pytest.HookRecorder for the HookRecorder <pytest.HookRecorder>{.interpreted-text role="class"} type returned from ~pytest.Pytester{.interpreted-text role="class"}.
  • pytest.RecordedHookCall for the RecordedHookCall <pytest.HookRecorder>{.interpreted-text role="class"} type returned from ~pytest.HookRecorder{.interpreted-text role="class"}.
  • pytest.RunResult for the RunResult <pytest.RunResult>{.interpreted-text role="class"} type returned from ~pytest.Pytester{.interpreted-text role="class"}.
  • pytest.LineMatcher for the LineMatcher <pytest.RunResult>{.interpreted-text role="class"} type used in ~pytest.RunResult{.interpreted-text role="class"} and others.
  • pytest.TestReport for the TestReport <pytest.TestReport>{.interpreted-text role="class"} type used in various hooks.
  • pytest.CollectReport for the CollectReport <pytest.CollectReport>{.interpreted-text role="class"} type used in various hooks.

  Constructing most of them directly is not supported; they are only meant for use in type annotations.
  Doing so will emit a deprecation warning, and may become a hard-error in pytest 8.0.

  Subclassing them is also not supported. This is not currently enforced at runtime, but is detected by type-checkers such as mypy.

• #​7856: --import-mode=importlib <import-modes>{.interpreted-text role="ref"} now works with features that
  depend on modules being on :pysys.modules{.interpreted-text role="data"}, such as pickle{.interpreted-text role="mod"} and dataclasses{.interpreted-text role="mod"}.

• #​8144: The following hooks now receive an additional pathlib.Path argument, equivalent to an existing py.path.local argument:

  • pytest_ignore_collect{.interpreted-text role="hook"} - The collection_path parameter (equivalent to existing path parameter).
  • pytest_collect_file{.interpreted-text role="hook"} - The file_path parameter (equivalent to existing path parameter).
  • pytest_pycollect_makemodule{.interpreted-text role="hook"} - The module_path parameter (equivalent to existing path parameter).
  • pytest_report_header{.interpreted-text role="hook"} - The start_path parameter (equivalent to existing startdir parameter).
  • pytest_report_collectionfinish{.interpreted-text role="hook"} - The start_path parameter (equivalent to existing startdir parameter).

  ::: {.note}
  ::: {.admonition-title}
  Note
  :::

  The name of the ~_pytest.nodes.Node{.interpreted-text role="class"} arguments and attributes (the
  new attribute being path) is the opposite of the situation for hooks
  (the old argument being path).

  This is an unfortunate artifact due to historical reasons, which should be
  resolved in future versions as we slowly get rid of the py{.interpreted-text role="pypi"}
  dependency (see 9283{.interpreted-text role="issue"} for a longer discussion).
  :::

• #​8251: Implement Node.path as a pathlib.Path. Both the old fspath and this new attribute gets set no matter whether path or fspath (deprecated) is passed to the constructor. It is a replacement for the fspath attribute (which represents the same path as py.path.local). While fspath is not deprecated yet
  due to the ongoing migration of methods like ~_pytest.Item.reportinfo{.interpreted-text role="meth"}, we expect to deprecate it in a future release.

  ::: {.note}
  ::: {.admonition-title}
  Note
  :::

  The name of the ~_pytest.nodes.Node{.interpreted-text role="class"} arguments and attributes (the
  new attribute being path) is the opposite of the situation for hooks
  (the old argument being path).

  This is an unfortunate artifact due to historical reasons, which should be
  resolved in future versions as we slowly get rid of the py{.interpreted-text role="pypi"}
  dependency (see 9283{.interpreted-text role="issue"} for a longer discussion).
  :::

• #​8421: pytest.approx{.interpreted-text role="func"} now works on ~decimal.Decimal{.interpreted-text role="class"} within mappings/dicts and sequences/lists.

• #​8606: pytest invocations with --fixtures-per-test and --fixtures have been enriched with:

  • Fixture location path printed with the fixture name.
  • First section of the fixture's docstring printed under the fixture name.
  • Whole of fixture's docstring printed under the fixture name using --verbose option.

• #​8761: New version-tuple{.interpreted-text role="ref"} attribute, which mak

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