#biopif

Bioinformatics tool Finder information using BioPython

Requeriments

• Biopython (sudo pip install Biopython)
• Python click (sudo pip install click)
• pyfasta (sudo pip install pyfasta)
• Hammer Package
• Lastest Protein Database UniProt - SwissProt
• Lastest Protein PFam Database

Dependencies

• BioPython
• click

Features

• Hmmer implementation for analize proteome
• Export to Website
• Create Documents MongoDB
• R Integration - Graph Protein Domain peer protein based in information from PFam Curated and PFam not curated

Roadmap

• Integrate with other external protein databases Ex: KEGG, GO, STRING, PROSITE.
• Generate automated service for access to documents - REST
• Beutify presentation and integration all documents an only report.

#Mac OS INSTALL (homebrew)

• $ brew tap homebrew/science
• $ brew install hmmer