gss_to_fasta.py

About

This script converts .gss files to .fasta files. Output files will have filenames corresponding to its input file, for example: GOUB_short_1.gss will convert to GOUB_short_1.fasta.

Common Usage

$ python gss_to_fasta.py -i *filename.gss -o output

where,

• *filename.gss is a .gss file to be transformed into a .fasta file
• output is the name of the output file (.fasta)

Example

Using some example .gss files, contained in the /gss_to_fasta/example/ directory of this repo, one can create output .fasta files using the following command:

$ python gss_to_fasta.py -i *.gss -o test

This will select all .gss files in your current directory, and convert them all into .fasta files.