Run on OSC

Running the workflow on the OSC SLURM Cluster.

The following commands should be run from a login node after cloning this repo.

Install Snakemake

module load miniconda3/23.3.1-py310
conda create -c conda-forge -c bioconda -n snakemake snakemake mamba
module purge

Run Workflow

module load miniconda3/23.3.1-py310
source activate snakemake
sbatch --account=PAS2136 run-workflow.sh