Code

EPIC: Plot refactor metadata#493

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r-ash merged 118 commits intomainhivtools/hintr:mainfrom tmp-epic-plot-cleanuphivtools/hintr:tmp-epic-plot-cleanupCopy head branch name to clipboardSep 16, 2024

+2,175-1,608

Commits

Commits on Jan 18, 2024

• refactor metadata + tests

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• clean up filters with same pattern

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Commits on Jan 19, 2024

• add setup file

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• Merge branch 'master' of github.com:mrc-ide/hintr into mrc-4959

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• fix integration test

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  04a1e0a

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• remove unnecessary function

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• rob changed: version bump + news + helper functions in right file

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• revert mockery in testthat

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• moved mockery to helper-aaa

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• add testthat file back in

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Commits on Feb 7, 2024

• add enum for plot names

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• added enum type

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• finally get schema right

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• removed plotnames because it was a failure

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• quarter to period, should have a test for this

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• changed filter type from quarter to period

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• default plot control for plots

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Commits on Feb 8, 2024

• effects to effect

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• options as an array

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Commits on Mar 6, 2024

• Use github actions for tests

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Commits on Mar 20, 2024

• Add naomi and naomi.options to remotes

  r-ash

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• Install libssh-dev manually

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• Build test data before running any tests

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• Install docker and colima so we can run redis on mac runners

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• Start tmate session on integration test failure

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• Fix windows test failures

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• Try increase retries for potentially slow mac ghactions runners

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• Add github actions for building docker container

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• Remove use of mockr in favour of new testthat helper, remove unused dependencies

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• Remove buildkite build

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• Fix how tempdir is being set

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• Update status badges in README

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Commits on Mar 22, 2024

• Add detail into barchart filters

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• Merge branch 'gh-actions' into tmp-epic-plot-cleanup

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• Update tests, only set area_level as a filter not a disaggregate/x-axis option

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Commits on Mar 27, 2024

• completed implementation, still need to do testing

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• add endpoint to hintr api

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• empty

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Commits on Apr 5, 2024

• add type conditions to the options in plot settings

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  2d71cb0

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• Merge branch 'master' of github.com:mrc-ide/hintr into tmp-epic-plot-cleanup-input

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• append lists correctly

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• return options

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• if art and anc not availble dont return time series

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• update lintr and add 3rd arg

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• add base filters

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• remove unnecessary function from output plot metadata

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• c instead of list

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• add stateFilterId instead of filterId for quarter

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• correct column ids

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Commits on Apr 24, 2024

• Merge branch 'relative-path' of github.com:mrc-ide/hintr into tmp-epic-plot-cleanup-input

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Commits on Apr 25, 2024

• default effect instead of default plot setting

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• update types

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• Add calibrate plot into output metadata

  r-ash

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• return plotting metadata instead of normal metadata

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• empty

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• function arg

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Commits on Apr 29, 2024

• Add calibrate metadata into schema

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• correct column id for anc dataset

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• Add label for calibrate indicator

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Commits on Apr 30, 2024

• Remove metadata from calibrate plot response

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• Temporarily build docker images for PR into plot cleanup

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• Set default filter values for calibrate barchart

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  da28d75

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• Fix typo

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Commits on May 1, 2024

• Add metadata for calibrate plot

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• Move calibrate metadata back into same response as data

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Commits on May 2, 2024

• Fix typo in default age

  r-ash

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• Bump naomi version

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Commits on May 7, 2024

• Move visibility flag on a filter into an effect

  r-ash

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Commits on May 8, 2024

• Make metadata more consistent, remove unnecessary default values

  r-ash

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• Merge pull request #510 from mrc-ide/new-calibrate-metadata

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• Add comparison plot metadata

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• Return indicator and detail in comparison metadata

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• Add area level to returned data

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• Add missing setFilters effect and ensure source filter is hidden

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• Update effects to set source filter as hidden

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• Update metadata to remove detail filter when area is not a multiselect

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• Remove unnecessary defaults, remove some unused code

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Commits on May 20, 2024

• Fix default filters for comparison plot

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• Add metadata for table

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• Add custom plot effect into metadata

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• Run docker build on merge into comparison metadata

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  6e95bac

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• Split schema up for more useful generated metadata

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• Remove now unused schema

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• Use set hidden for area filter in table metadata

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• Make area a multiselect

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• Add some context for the choices of metadata

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• Update metadata to match current prod defaults

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• Build docker image on merged into table-metadata

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• Hide detail filter in barchart when area is a single select

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  3c59139

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• Fix order of filters in comparison plot

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• Fix order of x-axis and disaggregate by and remove duplicate area control

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• Merge pull request #513 from mrc-ide/comparison-metadata

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• Merge pull request #514 from mrc-ide/table-metadata

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• Merge pull request #516 from mrc-ide/comparison-metadata

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• Remove branch pins

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Commits on Jun 3, 2024

• Update metadata to use better defaults for age

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Commits on Aug 23, 2024

• Merge pull request #515 from mrc-ide/metadata-defaults

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Commits on Aug 27, 2024

• Set default value for detail level in input plots

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Commits on Sep 4, 2024

• Use self referencing type for NestedFilterOption

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• Update metadata for comparison barchart

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Commits on Sep 5, 2024

• Remove self referential schema, this doesn't work with type generation

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• Update default filter selections for comparison plot

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• Rename ChoroplethIndicatorMetadata to IndicatorMetadata

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• Merge pull request #522 from mrc-ide/metadata-rename

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Commits on Sep 6, 2024

• Merge pull request #501 from mrc-ide/tmp-epic-plot-cleanup-input

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• Merge branch 'master' into tmp-epic-plot-cleanup

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• Remove a bunch of old code and endpoints

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Commits on Sep 9, 2024

• Add tests of new metadata

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• Run CI on merge into temporary epic branch

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• Update integration tests

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• Remove macos CI builds

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• Improve testing

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Commits on Sep 10, 2024

• Add explanatory note about test, and remove old debug

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• Merge pull request #523 from mrc-ide/remove-old-endpoints

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• Bump version number and add news item

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Commits on Sep 16, 2024

• Update build follow moving repo org

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• Fix test failures

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• Merge pull request #525 from hivtools/org-move

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