Open Re-implementation of Biomedical Literature APIs
Orbit is a framework for self-hosting clean room re-implementations of biomedical literature APIs. The APIs that are currently supported include
- Pubmed Entrez
- ClinicalTrials.gov
There are currently two versions of a live implementation running for demonstration and testing purposes:
- production (https://orbit.health-nlp.com) for the latest stable version.
- staging (https://orbit-staging.health-nlp.com) for the latest unstable version.
Both versions host all currently supported API re-implementations.
For heavy API usage, please host the service yourself (see below).
A single docker command runs the entire data acquisition, processing, and indexing process, and starts the API.
To run all services at once, use
$ docker-compose -f compose.all.yml up --build