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11 changes: 8 additions & 3 deletions notes/2023-10-26.md
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ We connect with secure shell or `ssh` from our terminal (GitBash or Putty on win

````{margin}
```{warning}
This cluster is for course related purposes at URI, if you want to use a HPC system of some sort for a side project, consider Amazon Web Services, Google Cloud, or Microsoft Azul services, you can get some allocation for free a a student.
This cluster is for course related purposes at URI, if you want to use a HPC system of some sort for a side project, consider Amazon Web Services, Google Cloud, or Microsoft Azul services, you can get some allocation for free as a student.

If you are doing research supervised by a URI professor, there are other servers on campus and URI participates in a regional HPC resource as well.
```
Expand Down Expand Up @@ -58,7 +58,7 @@ Warning: Permanently added 'seawulf.uri.edu,131.128.217.210' (ECDSA) to the list
brownsarahm@seawulf.uri.edu's password:
```

it does not show charachters when you type your password, but it works when hyou press enter
It does not show charachters when you type your password, but it works when you press enter

Then it requires you to change your password
```{code-block} console
Expand Down Expand Up @@ -99,7 +99,7 @@ brownsarahm@~ $ ssh -l brownsarahm seawulf.uri.edu
```


wehn you log in it shows you information about your recent logins.
When you log in it shows you information about your recent logins.

We have logged into our home directory which is empty

Expand Down Expand Up @@ -216,7 +216,12 @@ SRR307025_1.fastq SRR307030_1.fastq
SRR307025_2.fastq SRR307030_2.fastq
```

**Note:**
To extract files to a different directory use the option ```--directory```
```--directory path/to/directory```

## Using a compute note
<!--Is this intentionally empty??-->

## Working with large files

Expand Down