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isha2106/README.md

Hi! I'm Isha Parikh

GROWING, One Codon at a Time 🧬

Coding

👩‍💻 This is a place where curiosity meets code, and the occasional brain fart happens.

Welcome to my GitHub, where I experiment, iterate, and occasionally break things in the name of learning! I juggle bioinformatics tools, cancer genomics, scRNA workflows, and Nextflow pipelines while exploring the ever-evolving world of Bioinformatics.

I’m passionate about the intersection of machine learning and omics data, and I believe LLMs are reshaping how we approach complex problems in biology. Here, you’ll find my journey of trying, failing, and (hopefully) succeeding as I push boundaries and embrace new challenges.

Got a cool idea? Let’s tinker and build something awesome together! 🚀

Following are some of the private repositories which can be shared upon request:
  • Development of Variant Calling Pipeline for Genomic Studies
  • Integrated Multi-Omics Analysis of MDM2 Mutation
  • Development of Analytical Database and Analysis of Pharma Sales

Languages and Tools

R Python Bash SQL GenBank Ensembl UCSC Genome Browser UniProt PDB InterPro GEO KEGG dbSNP ClinVar 1000 Genomes ENCODE TCGA Samtools Minimap2 HISAT2 STAR BWA Bowtie BLAST GATK FreeBayes Strelka MuTect2 IGV DESeq2 EdgeR Salmon Kallisto SPAdes InterProScan BLAST2GO Clustal Omega QIIME2 AutoDock Rosetta Bioconductor Galaxy Biopython BEDTools VCFtools Bash Latex Markdown Git Github Anaconda MACOS Linux Docker Nextflow Jupyter Pycharm Rstudio Pubmed Researchgate

Connect with me

ishaparikh98

Pinned Loading

  1. Cancer-Classifier-ML-Model Cancer-Classifier-ML-Model Public archive

    R

  2. stjude-biohackathon/KIDS25-Team22 stjude-biohackathon/KIDS25-Team22 Public

    Genesis: Multi-Modal Agentic AI for Cancer Variant Effect Prioritization

    Python 2 2

  3. BioITHackathons/GlycoEnzyme-Expression-Atlas BioITHackathons/GlycoEnzyme-Expression-Atlas Public

    R 1 2

  4. AgarwalVibha/rare-disease-diagnosis AgarwalVibha/rare-disease-diagnosis Public

    JavaScript