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Re-compute of md5 for large files. #1991

@colllin

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@colllin

Please provide information about your setup
DVC v0.40.1, installed via Pipenv on Ubuntu 16.

See also #1659, which was a similar issue but for large directories.

It seems there is a bug which causes the md5 to be re-computed for large files. @efiop was able to find a reproducible example for it. From discord:

#!/bin/bash                                  
                                             
set -e                                       
set -x                                       
                                             
rm -rf mytest                                
mkdir mytest                                 
cd mytest                                    
                                             
REMOTE=$(pwd)/myremote                       
mkdir $REMOTE                                
                                             
mkdir myrepo                                 
cd myrepo                                    
git init                                     
dvc init                                     
                                             
dvc remote add myremote $REMOTE -d           
                                             
dd if=/dev/urandom of=data  bs=1M  count=1111
                                             
dvc add data                                 
                                             
dvc status                                   
                                             
dvc status                                   
                                             
dvc push                                     
                                             
rm -rf data                                  
rm -rf .dvc/cache                            
                                             
dvc status                                   
                                             
dvc pull                                     
                                             
dvc status                                   
                                             
dvc status                                   

Even on pull it computes md5 of the same file twice. And then again on status after it once. Interesting.

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