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perf: unneeded runs on repro #3004

@Suor

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@Suor

This NOTE looks wrong. Example stage depends on a python script, a user adds a comment to that script that makes dvc repro rerun that stage, however, the outs are the same, so the of the pipeline should not be rerun.

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    bugDid we break something?p3-nice-to-haveIt should be done this or next sprintrefactoringFactoring and re-factoring

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