GSoC 2024 - 2D visualization for small molecules #28
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I uploaded the figure in the images folder and reference it currently from there in the same style that some figures are referenced in Workshop and some other blog posts |
jennaswa
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Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com>
Added RDKit ref Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com>
jennaswa
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jennaswa
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typo error an/a Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com>
Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com>
typo error in shoutout Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com>
Addition of google opensource link Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com>
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LGTM - thanks, @talagayev! I left only a few small suggestions for adding relevant links and a couple of grammatical fixes.
I'm also going to copy your mentors (@cbouy, @richardjgowers, and @yuxuanzhuang) into this PR to see if they have any feedback.
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@jennaswa thanks for looking and reviewing the PR and adding the links + fixing the grammatical errors, sorry for them, thought I checked all of them 😿 . |
Adjusted code to widget Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
removed separate import of mdonatello
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
removed mention of stable version
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com>
Separated into separate bullet points the features
Adjusted the wording in the code restructure section
jennaswa
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that referenced
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Sep 2, 2024
* Skeleton blog post for GSoC small project wrap-up * GSoC 2024 - 2D visualization for small molecules (#28) * Create 2024-08-02-gsoc2024_talagayev.md * Update 2024-08-01-gsoc2024-final-sm.md * Changed Figure URL * Added figure for mdonatello display * Update 2024-08-02-gsoc2024_talagayev.md Adjusted the figure path * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Added RDKit ref Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md typo error an/a Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md typo error in shoutout Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Addition of google opensource link Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Adjusted code to widget Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update 2024-08-02-gsoc2024_talagayev.md removed separate import of mdonatello * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update 2024-08-02-gsoc2024_talagayev.md removed mention of stable version * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update 2024-08-02-gsoc2024_talagayev.md Separated into separate bullet points the features * Update 2024-08-02-gsoc2024_talagayev.md Adjusted the wording in the code restructure section --------- Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * GSoC 2024 - Streaming H5MD trajectories from cloud services (#29) * update lawson woods * acknowledgments tweaks * spelling * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * acknowledgements update --------- Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Add Lawson's md file name to blog post * Change blog post to current date * Change blog post titles to match Lawson and Valerij's actual posts --------- Co-authored-by: Valerij Talagayev <82884038+talagayev@users.noreply.github.com> Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> Co-authored-by: ljwoods2 <145226270+ljwoods2@users.noreply.github.com>
jennaswa
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* Skeleton blog post for GSoC small project wrap-up * update lawson woods * acknowledgments tweaks * spelling * GSoC 2024 - 2D visualization for small molecules (#28) * Create 2024-08-02-gsoc2024_talagayev.md * Update 2024-08-01-gsoc2024-final-sm.md * Changed Figure URL * Added figure for mdonatello display * Update 2024-08-02-gsoc2024_talagayev.md Adjusted the figure path * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Added RDKit ref Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md typo error an/a Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md typo error in shoutout Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Addition of google opensource link Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Adjusted code to widget Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update 2024-08-02-gsoc2024_talagayev.md removed separate import of mdonatello * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update 2024-08-02-gsoc2024_talagayev.md removed mention of stable version * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-02-gsoc2024_talagayev.md Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update 2024-08-02-gsoc2024_talagayev.md Separated into separate bullet points the features * Update 2024-08-02-gsoc2024_talagayev.md Adjusted the wording in the code restructure section --------- Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * Update _posts/2024-08-03-gsoc2024_woods.markdown Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> * acknowledgements update * start * WIP * add * fill out * spelling * add MHeyden paragraph * add registration * tweaks + schedule * grammarly * setup for interactive activity * Revert "Merge pull request #4 from ljwoods2/streaming" This reverts commit ffdade9, reversing changes made to db87686. * add Lawson changes manually * Apply suggestions from code review Co-authored-by: Oliver Beckstein <orbeckst@gmail.com> * add NSF logo * Update _posts/2024-11-3-ASU_streaming_workshop.md @HeydenLabASU correction (grammar) --------- Co-authored-by: Jenna M Swarthout Goddard <38287809+jennaswa@users.noreply.github.com> Co-authored-by: Lawson Woods <ljwoods2@asu.edu> Co-authored-by: Valerij Talagayev <82884038+talagayev@users.noreply.github.com> Co-authored-by: Cédric Bouysset <bouysset.cedric@gmail.com> Co-authored-by: ljwoods2 <145226270+ljwoods2@users.noreply.github.com> Co-authored-by: Oliver Beckstein <orbeckst@gmail.com>
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Here is my blog for the GSoC 2024 Wrap up:
2024-08-02-gsoc2024_talagayev.mdwith the blog2024-08-01-gsoc2024-final-sm.md@jennaswa I am not sure regarding the Figure, since I use a figure in my blog and from the previous GSoC 2023 final blogs the figures had a different format for the path that they were accessed, currently I have the url for the figure in the blog, should I somehow add the figure into the PR and change the path or how should it be?