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v0.1.13: lucky for all cdm-data-loaders fans!
What's Changed
- Workflow run tests by @ialarmedalien in #291
- Move uniprot/uniref pipelines to uniprot_cdm/uniref_cdm namespace by @ialarmedalien in #292
- New xsd/pyarrow XML data loader by @ialarmedalien in #293
- v0.1.12: new uniprot / uniref XML pipelines by @ialarmedalien in #294
- Develop => main for v0.1.12 by @ialarmedalien in #295
- Refactor: remove lots of repeated rebar by @ialarmedalien in #296
- First drafts of various schema - AllTheBacteria, GAF, GFF, GTDB, NCBI by @ialarmedalien in #300
- Corrections to JSONSchema to pyarrow converter, plus addition of test… by @ialarmedalien in #304
- Refactor super slow tests by @ialarmedalien in #305
- Add in JSONSchema to pyarrow data conversion. by @ialarmedalien in #306
- Bump github/codeql-action/upload-sarif from ae098fa9fe6541a837c2271de7f9718bcfd06aa0 to 3306ba4df796b6b5059316f3af8bdea1e2138c9b in the actions group across 1 directory by @dependabot[bot] in #298
- Report fixes by @ialarmedalien in #307
- Include filenames by @ialarmedalien in #308
- Bump tornado from 6.5.10 to 6.6 in the uv group across 1 directory by @dependabot[bot] in #309
- More deduplication by @ialarmedalien in #313
- More refactoring by @ialarmedalien in #314
- Even more junk dna removal by @ialarmedalien in #315
- table names and pipelines by @ialarmedalien in #316
- First step for making input dir compatible with s3 and other remote fs by @ialarmedalien in #317
- end brief flirtation with xml2db by @ialarmedalien in #318
- Fix up potential issues caused by running code in parallel threads by @ialarmedalien in #330
- Adding in transformer capabilities to generic pipelines by @ialarmedalien in #331
- Splitting up uniref pipeline into 3 easy pieces by @ialarmedalien in #332
- Alter docker tests to run in docker build pipeline. by @ialarmedalien in #333
- Fix segfault in duckdb by @ialarmedalien in #335
- Minor typing changes by @ialarmedalien in #336
- First draft of pydantic => pyarrow converter by @ialarmedalien in #337
- Remove unneeded linter comments. Update AGENTS.md and pyproject.toml. by @ialarmedalien in #338
- Bump the actions group across 1 directory with 4 updates by @dependabot[bot] in #334
- Moving docs tests to a separate action so they do not affect real tests by @ialarmedalien in #341
- Bump github/codeql-action/upload-sarif from 4f900f43bc6bfc406aac5f37e402badfc55f9342 to 0911ee96d2d6c8def97122c36c5cadd93829a4b4 in the actions group across 1 directory by @dependabot[bot] in #340
- Updating module deps by @ialarmedalien in #342
- Xml level parser by @ialarmedalien in #343
- Moving specs to top level directory by @ialarmedalien in #344
- Version bump by @ialarmedalien in #345
Full Changelog: v0.1.11...v0.1.13