DesignNotes for new RKColocal ImageJ Plugin

Welcome to the RKColocal wiki!

Future notes will go here... time to get organized!

TO DO

Ellen

1. Continue to write MTKT test Op
2. Update AutoThreshold Op ... fix tests
3. Update Pearsons methods to optionally include threshold... also, rename as they are Costes methods...

Random Thoughts

1. Provide users opportunity to pre-process images... most importantly, Costes AutoThreshold method (as in Coloc2) before Pearsons and Manders calculations...
2. Include warnings... ex) did auto thresh method work, is Pearsons<thresholds close to zero? ex) intercept far from 0? ex) regression slope far from 1 (could cause numeral problems in auto threshold)?