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DesignNotes for new RKColocal ImageJ Plugin

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Ellen T Arena edited this page Dec 9, 2017 · 5 revisions

Welcome to the RKColocal wiki!

Future notes will go here... time to get organized!

TO DO

Random Thoughts

  1. Provide users opportunity to pre-process images... most importantly, Costes AutoThreshold method (as in Coloc2) before Pearsons and Manders calculations...
  2. Include warnings... ex) did auto thresh method work, is Pearsons<thresholds close to zero? ex) intercept far from 0? ex) regression slope far from 1 (could cause numeral problems in auto threshold)?

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