Alchemy Server

Initialization

• Running the command to download the repo: git clone https://github.com/leebird/alchemy-server
• Init the submodules: git submodule init
• Create a Python 3 virtual enviroment: virtualenv --python=python3 env
• Acticate Python virtual environment: . env/bin/activate
• Install Python modules: pip install -r requirements.txt

Create Database

• Create a MySQL database
• Import the database dump (the one on lysine)
• Modify alchemy_server/settings.py to match the created database
• Start the development server by running python manage.py runserver

Django

• Admin interface: http://yoursite/admin with account test/test.
• Brat visualization: http://yoursite/brat/PMID. (replace 'PMID' with a real PMID)

Note

The project is based on Django (https://www.djangoproject.com/). I suggest reading the Django tutorials (https://docs.djangoproject.com/en/1.9/intro/tutorial01/) if there are problems.