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Added text track support for callingcard #151

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Merged
merged 1 commit into from
Feb 13, 2020
Merged

Added text track support for callingcard #151

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14 changes: 14 additions & 0 deletions frontend/src/components/TextTrack.js
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Original file line number Diff line number Diff line change
Expand Up @@ -77,6 +77,20 @@ chr1 791044 793910 chr8:248210-251154,2 7 .`
"chr5:1270279-1272416<->SV40:5172-5243" TRUE FALSE NA 35 37.2369416773403
"chr8:128109053-128110360<->chr8:129534833-129536039" FALSE FALSE 1425729.5 100 34.8639202860754
"chr20:49345639-49354229<->chr20:50511129-50512012" FALSE FALSE 1161636.5 129 30.5556940820741`
},
callingcard: {
label: 'callingcard',
desc: 'Text file in CCF format, comprising 4-6 columns: chrom, start, end, value; and, optionally, strand and annotation',
example: `chr1 51441754 51441758 1 - CTAGAGACTGGC
chr1 51441754 51441758 21 - CTTTCCTCCCCA
chr1 51982564 51982568 3 + CGCGATCGCGAC
chr1 52196476 52196480 1 + AGAATATCTTCA
chr1 52341019 52341023 1 + TACGAAACACTA
chr1 59951043 59951047 1 + ACAAGACCCCAA
chr1 59951043 59951047 1 + ACAAGAGAGACT
chr1 61106283 61106287 1 - ATGCACTACTTC
chr1 61106283 61106287 7 - CGTTTTTCACCT
chr1 61542006 61542010 1 - CTGAGAGACTGG`
}
};

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15 changes: 12 additions & 3 deletions frontend/src/components/trackConfig/CallingCardTrackConfig.ts
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Expand Up @@ -6,6 +6,7 @@ import { BedWorker } from '../../dataSources/WorkerTSHook';
import LocalBedSource from '../../dataSources/LocalBedSource';
import CallingCard from '../../model/CallingCard';
import BedRecord from '../../dataSources/bed/BedRecord';
import BedTextSource from "../../dataSources/BedTextSource";
import HeightConfig from '../trackContextMenu/HeightConfig';
import YscaleConfig from '../trackContextMenu/YscaleConfig';
import LogScaleConfig from '../trackContextMenu/LogScaleConfig';
Expand All @@ -22,10 +23,18 @@ export class CallingCardTrackConfig extends TrackConfig {
}

initDataSource() {
if (this.trackModel.files.length > 0) {
return new LocalBedSource(this.trackModel.files);
if (this.trackModel.isText) {
return new BedTextSource({
url: this.trackModel.url,
blob: this.trackModel.fileObj,
textConfig: this.trackModel.textConfig
});
} else {
return new WorkerSource(BedWorker, this.trackModel.url);
if (this.trackModel.files.length > 0) {
return new LocalBedSource(this.trackModel.files);
} else {
return new WorkerSource(BedWorker, this.trackModel.url);
}
}
}

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