A collection of miRna Analysis pipes, current function could be used for predicting the miRNA based on the sequences from input dataset.
Before use this pipe users should Install the following softare and the configure the config file in this folder when use this pipeline at the first time
Nextflow
miranda
targetScan
java
R
vendiagram package
nextflow run miRnaAnalysis/predictMiRNA.nf -profile c2 --fasta candidates_seq.fa
--fasta the mRNA sequences in fasta format for predicting.