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Fix schema IDs to use https://w3id.org/valuesets #44

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Merged
cmungall merged 3 commits into from
Feb 3, 2026
Merged

Fix schema IDs to use https://w3id.org/valuesets #44

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022e4b3
Fix schema IDs to use https://w3id.org/valuesets
dragon-ai-agent Jan 31, 2026
b76603a
Fix remaining URL references to use https://w3id.org/valuesets
dragon-ai-agent Jan 31, 2026
91141ba
Fix ExtractableTargetElement enum
dragon-ai-agent Jan 31, 2026
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2 changes: 1 addition & 1 deletion docs/manuscript/manuscript.md
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Original file line number Diff line number Diff line change
Expand Up @@ -98,7 +98,7 @@ CVS schemas are authored in YAML following LinkML syntax. Each schema file defin

```yaml
name: schema_name
id: https://w3id.org/linkml/valuesets/domain/schema_name
id: https://w3id.org/valuesets/domain/schema_name
prefixes:
ontology_prefix: http://purl.obolibrary.org/obo/ONTOLOGY_

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1,310 changes: 655 additions & 655 deletions docs/schema/valuesets.yaml
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2 changes: 1 addition & 1 deletion project/jsonschema/valuesets.schema.json
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Expand Up @@ -10531,7 +10531,7 @@
"type": "string"
}
},
"$id": "https://w3id.org/linkml/valuesets",
"$id": "https://w3id.org/valuesets",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"additionalProperties": true,
"metamodel_version": "1.7.0",
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4 changes: 2 additions & 2 deletions scripts/merge_enums_hierarchy.py
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Expand Up @@ -87,14 +87,14 @@ def build_hierarchical_schema(schema_dir: Path) -> Dict[str, Any]:

# Initialize the merged schema
merged_schema = {
'id': 'https://w3id.org/linkml/valuesets/merged',
'id': 'https://w3id.org/valuesets/merged',
'name': 'valuesets_merged_hierarchy',
'title': 'Merged Value Sets with Hierarchical Structure',
'description': 'All value sets merged into a single hierarchical structure with is_a relationships',
'license': 'MIT',
'prefixes': {
'linkml': 'https://w3id.org/linkml/',
'valuesets': 'https://w3id.org/linkml/valuesets/',
'valuesets': 'https://w3id.org/valuesets/',
},
'default_prefix': 'valuesets',
'imports': ['linkml:types'],
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2 changes: 1 addition & 1 deletion src/valuesets/datamodel/valuesets.py
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Expand Up @@ -52,7 +52,7 @@ def __contains__(self, key: str) -> bool:
return key in self.root


linkml_meta = LinkMLMeta({'default_prefix': 'valuesets', 'description': 'A collection of commonly used value sets', 'id': 'https://w3id.org/linkml/valuesets', 'name': 'valuesets', 'title': 'valuesets'})
linkml_meta = LinkMLMeta({'default_prefix': 'valuesets', 'description': 'A collection of commonly used value sets', 'id': 'https://w3id.org/valuesets', 'name': 'valuesets', 'title': 'valuesets'})

class RelativeTimeEnum(RichEnum):
"""
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