[deps] Upgrade dependencies to fix various functionality and tests #58
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This patch bumps most dependencies to recent versions, which should resolve many Dependabot alerts. In addition to that, it allows all the tests to finally run successfully.
It seems that in a recent version, Flask-WTF's forms stopped providing the hidden_tag() method. Instead, FlaskForms provide that method.
Flask's JSONEncoder class was removed in version 3.0 since the Python Standard Library provides its own json library. Instead, update the code to use either that or Flask's default JSON provider. Flask apps don't have a `.json_encoder` property anymore, the property is `.json`.
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Fix some tests with invalid expectations, or which relied on implementation details like matching the internal server error string.
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This PR updates most of the dependencies to their latest version. I have tried extracting as
many independent patches as possible, however at the core there are a few interdependent
changes.