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Description
When validating the file below:
sssom validate mp_hp_owt_impc.sssom.tsv
I get:
check_all_prefixes_in_curie_map
raise ValidationError(
jsonschema.exceptions.ValidationError: The prefixes in [''] are missing from 'curie_map'.
This can be fixed by adding another orcid into the reviewer column. Something is wrong with the way the prefixes are extracted from the table?
# creator_id: orcid:0000-0002-2232-0967
# curie_map:
# HP: http://purl.obolibrary.org/obo/HP_
# MP: http://purl.obolibrary.org/obo/MP_
# owl: http://www.w3.org/2002/07/owl#
# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
# rdfs: http://www.w3.org/2000/01/rdf-schema#
# skos: http://www.w3.org/2004/02/skos/core#
# sssom: https://w3id.org/sssom/
# orcid: https://orcid.org/
# obo: http://purl.obolibrary.org/obo/
# semapv: https://w3id.org/semapv/
# license: https://creativecommons.org/publicdomain/zero/1.0/
# mapping_provider: https://www.mousephenotype.org
# mapping_set_description: 'The IMPC Mouse Morphology Mappings: Organ Weight Test'
# mapping_set_id: mp_hp_owt_impc
subject_id subject_label predicate_id object_id object_label mapping_justification reviewer_id
MP:0001259 abnormal body weight skos:exactMatch HP:0004323 Abnormality of body weight semapv:LexicalMatching orcid:0000-0002-7356-1779
MP:0002707 abnormal kidney weight skos:closeMatch HP:0000077 Abnormality of the kidney semapv:LogicalReasoning
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bugSomething isn't workingSomething isn't working