mathLab · ndem0 · Mar 22, 2018 · Mar 20, 2018 · Mar 20, 2018 · Mar 21, 2018
diff --git a/.travis.yml b/.travis.yml
@@ -49,7 +49,7 @@ install:
         conda create --yes -n test python="2.7";
       fi
     - source activate test
-    - conda install --yes numpy scipy matplotlib vtk pip nose sip=4.18
+    - pip install numpy scipy matplotlib vtk nose
     - conda install --yes -c https://conda.anaconda.org/dlr-sc pythonocc-core==0.17
     - pip install setuptools
     - pip install coveralls

diff --git a/README.md b/README.md
@@ -49,14 +49,13 @@ See the [**Examples**](#examples) section below and the [**Tutorials**](tutorial
 
 
 ## Dependencies and installation
-**PyGeM** requires `numpy`, `scipy` and `matplotlib`. They can be easily installed via `pip`. 
-Moreover **PyGeM** depends on `OCC` and `vtk`. These requirements cannot be satisfied through `pip`.
+**PyGeM** requires `numpy`, `scipy`, `matplotlib`, `vtk`, `sphinx` (for the documentation) and `nose` (for local test). They can be easily installed via `pip`. 
+Moreover **PyGeM** depends on `OCC`. These requirements cannot be satisfied through `pip`.
 Please see the table below for instructions on how to satisfy the requirements.
 
 | Package | Version  | Comment                                                                    |
 |---------|----------|----------------------------------------------------------------------------|
 | OCC     | == 0.17  | See pythonocc.org or github.com.tpaviot/pythonocc-core for instructions or `conda install -c https://conda.anaconda.org/dlr-sc pythonocc-core==0.17` |
-| vtk     | >= 5.0   | Simplest solution is `conda install vtk`                                   |
 
 
 The official distribution is on GitHub, and you can clone the repository using
@@ -122,7 +121,7 @@ The generated html can be found in `docs/build/html`. Open up the `index.html` y
 ## Testing
 We are using Travis CI for continuous intergration testing. You can check out the current status [here](https://travis-ci.org/mathLab/PyGeM).
 
-To run tests locally:
+To run tests locally (the package `nose` is required):
 
 ```bash
 > python test.py
@@ -153,20 +152,6 @@ Here we show three applications, taken from the **naval**, **nautical** and **au
 <em>DrivAer model: morphing of the bumper starting from an OpenFOAM mesh file.</em>
 </p>
 
-
-## Graphical User Interface
-**PyGeM** is now provided with a very basic Graphical User Interface (GUI) that, in Ubuntu environment, looks like the one depicted below. This feature can be easily used even by the pythonists beginners with not much effort. Up to now, PyGeM GUI works on linux and Mac OS X computers.
-
-Pick the geometry, the parameters file, set the name of the output and decide whether dump the FFD lattices or not. Now just click on the `Run PyGeM` button and that is it. For a demonstration, see the [video tutorial on YouTube](https://youtu.be/iAjGEhXs_ys).
-
-<p align="center">
-<img src="readme/gui_PyGeM.png" alt>
-</p>
-<p align="center">
-<em>PyGeM GUI: how it appears when it pops up.</em>
-</p>
-
-
 ## How to cite
 If you use this package in your publications please cite the package as follows:
 

diff --git a/docs/source/_summaries/pygem.gui.Gui._chose_geometry.rst b/docs/source/_summaries/pygem.gui.Gui._chose_geometry.rst
diff --git a/docs/source/_summaries/pygem.gui.Gui._chose_parameters.rst b/docs/source/_summaries/pygem.gui.Gui._chose_parameters.rst
diff --git a/docs/source/_summaries/pygem.gui.Gui._goto_website.rst b/docs/source/_summaries/pygem.gui.Gui._goto_website.rst
diff --git a/docs/source/_summaries/pygem.gui.Gui._main.rst b/docs/source/_summaries/pygem.gui.Gui._main.rst
diff --git a/docs/source/_summaries/pygem.gui.Gui._run_simulation.rst b/docs/source/_summaries/pygem.gui.Gui._run_simulation.rst
diff --git a/docs/source/_summaries/pygem.gui.Gui.start.rst b/docs/source/_summaries/pygem.gui.Gui.start.rst
diff --git a/docs/source/_summaries/pygem.idw.IDW.perform.rst b/docs/source/_summaries/pygem.idw.IDW.perform.rst
@@ -1,5 +1,5 @@
-pygem\.idw\.IDW\.perform
-========================
+pygem.idw.IDW.perform
+=====================
 
 .. currentmodule:: pygem.idw
 

diff --git a/docs/source/_summaries/pygem.params.FFDParameters._calculate_bb_dimension.rst b/docs/source/_summaries/pygem.params.FFDParameters._calculate_bb_dimension.rst
diff --git a/docs/source/_summaries/pygem.params.FFDParameters._set_box_dimensions.rst b/docs/source/_summaries/pygem.params.FFDParameters._set_box_dimensions.rst
diff --git a/docs/source/_summaries/pygem.params.FFDParameters._set_mapping.rst b/docs/source/_summaries/pygem.params.FFDParameters._set_mapping.rst
diff --git a/docs/source/_summaries/pygem.params.FFDParameters._set_position_of_vertices.rst b/docs/source/_summaries/pygem.params.FFDParameters._set_position_of_vertices.rst
diff --git a/...ce/_summaries/pygem.params.FFDParameters._set_transformation_params_to_zero.rst b/...ce/_summaries/pygem.params.FFDParameters._set_transformation_params_to_zero.rst
diff --git a/docs/source/_summaries/pygem.params.FFDParameters.build_bounding_box.rst b/docs/source/_summaries/pygem.params.FFDParameters.build_bounding_box.rst
diff --git a/docs/source/_summaries/pygem.params.FFDParameters.print_info.rst b/docs/source/_summaries/pygem.params.FFDParameters.print_info.rst
diff --git a/docs/source/_summaries/pygem.params.FFDParameters.read_parameters.rst b/docs/source/_summaries/pygem.params.FFDParameters.read_parameters.rst
diff --git a/docs/source/_summaries/pygem.params.FFDParameters.write_parameters.rst b/docs/source/_summaries/pygem.params.FFDParameters.write_parameters.rst
diff --git a/docs/source/_summaries/pygem.params.RBFParameters.print_info.rst b/docs/source/_summaries/pygem.params.RBFParameters.print_info.rst
diff --git a/docs/source/_summaries/pygem.params.RBFParameters.read_parameters.rst b/docs/source/_summaries/pygem.params.RBFParameters.read_parameters.rst
diff --git a/docs/source/_summaries/pygem.params.RBFParameters.write_parameters.rst b/docs/source/_summaries/pygem.params.RBFParameters.write_parameters.rst
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.build_bounding_box.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.build_bounding_box.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.build_bounding_box
+=======================================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. automethod:: FFDParameters.build_bounding_box
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.inv_psi_mapping.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.inv_psi_mapping.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.inv_psi_mapping
+====================================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. autoattribute:: FFDParameters.inv_psi_mapping
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.position_vertices.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.position_vertices.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.position_vertices
+======================================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. autoattribute:: FFDParameters.position_vertices
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.psi_mapping.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.psi_mapping.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.psi_mapping
+================================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. autoattribute:: FFDParameters.psi_mapping
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.read_parameters.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.read_parameters.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.read_parameters
+====================================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. automethod:: FFDParameters.read_parameters
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.reset_deformation.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.reset_deformation.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.reset_deformation
+======================================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. automethod:: FFDParameters.reset_deformation
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.rotation_matrix.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.rotation_matrix.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.rotation_matrix
+====================================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. autoattribute:: FFDParameters.rotation_matrix
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.save.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.save.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.save
+=========================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. automethod:: FFDParameters.save
diff --git a/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.write_parameters.rst b/docs/source/_summaries/pygem.params.ffdparams.FFDParameters.write_parameters.rst
@@ -0,0 +1,6 @@
+pygem.params.ffdparams.FFDParameters.write_parameters
+=====================================================
+
+.. currentmodule:: pygem.params.ffdparams
+
+.. automethod:: FFDParameters.write_parameters
diff --git a/docs/source/_summaries/pygem.params.idwparams.IDWParameters.read_parameters.rst b/docs/source/_summaries/pygem.params.idwparams.IDWParameters.read_parameters.rst
@@ -0,0 +1,6 @@
+pygem.params.idwparams.IDWParameters.read_parameters
+====================================================
+
+.. currentmodule:: pygem.params.idwparams
+
+.. automethod:: IDWParameters.read_parameters
diff --git a/docs/source/_summaries/pygem.params.idwparams.IDWParameters.write_parameters.rst b/docs/source/_summaries/pygem.params.idwparams.IDWParameters.write_parameters.rst
@@ -0,0 +1,6 @@
+pygem.params.idwparams.IDWParameters.write_parameters
+=====================================================
+
+.. currentmodule:: pygem.params.idwparams
+
+.. automethod:: IDWParameters.write_parameters
diff --git a/docs/source/_summaries/pygem.params.rbfparams.RBFParameters.n_control_points.rst b/docs/source/_summaries/pygem.params.rbfparams.RBFParameters.n_control_points.rst
@@ -0,0 +1,6 @@
+pygem.params.rbfparams.RBFParameters.n_control_points
+=====================================================
+
+.. currentmodule:: pygem.params.rbfparams
+
+.. autoattribute:: RBFParameters.n_control_points
diff --git a/docs/source/_summaries/pygem.params.rbfparams.RBFParameters.read_parameters.rst b/docs/source/_summaries/pygem.params.rbfparams.RBFParameters.read_parameters.rst
@@ -0,0 +1,6 @@
+pygem.params.rbfparams.RBFParameters.read_parameters
+====================================================
+
+.. currentmodule:: pygem.params.rbfparams
+
+.. automethod:: RBFParameters.read_parameters
diff --git a/docs/source/_summaries/pygem.params.rbfparams.RBFParameters.save.rst b/docs/source/_summaries/pygem.params.rbfparams.RBFParameters.save.rst
@@ -0,0 +1,6 @@
+pygem.params.rbfparams.RBFParameters.save
+=========================================
+
+.. currentmodule:: pygem.params.rbfparams
+
+.. automethod:: RBFParameters.save
diff --git a/docs/source/_summaries/pygem.params.rbfparams.RBFParameters.write_parameters.rst b/docs/source/_summaries/pygem.params.rbfparams.RBFParameters.write_parameters.rst
@@ -0,0 +1,6 @@
+pygem.params.rbfparams.RBFParameters.write_parameters
+=====================================================
+
+.. currentmodule:: pygem.params.rbfparams
+
+.. automethod:: RBFParameters.write_parameters
diff --git a/docs/source/_summaries/pygem.params_idw.IDWParameters.__str__.rst b/docs/source/_summaries/pygem.params_idw.IDWParameters.__str__.rst
diff --git a/docs/source/_summaries/pygem.params_idw.IDWParameters.read_parameters.rst b/docs/source/_summaries/pygem.params_idw.IDWParameters.read_parameters.rst
diff --git a/docs/source/_summaries/pygem.params_idw.IDWParameters.write_parameters.rst b/docs/source/_summaries/pygem.params_idw.IDWParameters.write_parameters.rst
diff --git a/docs/source/_summaries/pygem.radial.RBF.polyharmonic_spline.rst b/docs/source/_summaries/pygem.radial.RBF.polyharmonic_spline.rst
@@ -1,6 +1,6 @@
 pygem.radial.RBF.polyharmonic_spline
-==================================
+====================================
 
 .. currentmodule:: pygem.radial
 
-.. automethod:: RBF.polyharmonic_spline
+.. automethod:: RBF.polyharmonic_spline
diff --git a/docs/source/_summaries/pygem.utils._write_vtk_box.rst b/docs/source/_summaries/pygem.utils._write_vtk_box.rst
diff --git a/docs/source/_summaries/pygem.utils.plot_rbf_control_points.rst b/docs/source/_summaries/pygem.utils.plot_rbf_control_points.rst
diff --git a/docs/source/_summaries/pygem.utils.write_bounding_box.rst b/docs/source/_summaries/pygem.utils.write_bounding_box.rst
diff --git a/docs/source/_summaries/pygem.utils.write_points_in_vtp.rst b/docs/source/_summaries/pygem.utils.write_points_in_vtp.rst
diff --git a/docs/source/affine.rst b/docs/source/affine.rst
@@ -15,4 +15,4 @@ Affine
 
 .. automodule:: pygem.affine
     :members:
-
+    :noindex:
Original file line number	Diff line number	Diff line change
Expand Up		@@ -15,4 +15,4 @@ Affine

		.. automodule:: pygem.affine
		:members:

		:noindex: