Fix flake8 and yamllint style issues

QuLogic · QuLogic · commit e6f95fa280f3 · 2023-03-27T19:24:22.000-04:00
And add a minimal config setting line length to 88 as in Matplotlib.
diff --git a/.flake8 b/.flake8
@@ -0,0 +1,2 @@
+[flake8]
+max-line-length = 88
diff --git a/.github/workflows/circleci.yml b/.github/workflows/circleci.yml
@@ -1,4 +1,3 @@
----
 name: "CircleCI artifact handling"
 on: [status]
 jobs:
diff --git a/.github/workflows/gh-pages.yml b/.github/workflows/gh-pages.yml
@@ -1,4 +1,3 @@
----
 name: GitHub Pages
 
 on:
diff --git a/.yamllint.yml b/.yamllint.yml
@@ -0,0 +1,9 @@
+extends: default
+
+rules:
+  document-start:
+    present: false
+  line-length:
+    max: 88
+  truthy:
+    check-keys: false
diff --git a/packages/DnaFeaturesViewer.yml b/packages/DnaFeaturesViewer.yml
@@ -1,6 +1,7 @@
 name: DNA Features Viewer
 repo: Edinburgh-Genome-Foundry/DnaFeaturesViewer
 section: domain specific libraries
-description: Visualize DNA features, e.g. from GenBank or Gff files, or Biopython SeqRecords.
+description: >-
+  Visualize DNA features, e.g. from GenBank or Gff files, or Biopython SeqRecords.
 site: https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/
 pypi_name: dna-features-viewer
diff --git a/packages/PyNanoLab.yml b/packages/PyNanoLab.yml
@@ -1,6 +1,6 @@
 name: PyNanoLab
 repo: decacent/PyNanoLab
 section: gui applications
-description:  PySide6 GUI for data analysis and visualisation with matplotlib and pandas.
+description: PySide6 GUI for data analysis and visualisation with Matplotlib and Pandas.
 site: https://pynanolab.com
-keywords: [GUI, PySide6,matplotlib, pandas, data analysis] # optional
+keywords: [GUI, PySide6, matplotlib, pandas, data analysis]
diff --git a/packages/PySimpleGUI.yml b/packages/PySimpleGUI.yml
@@ -1,7 +1,9 @@
 name: PySimpleGUI
 repo: PySimpleGUI/PySimpleGUI
 section: gui applications
-description: Create custom GUIs quickly & easily on top of tkinter, Qt, WxPython or Remi.
+description: >-
+  Create custom GUIs quickly & easily on top of tkinter, Qt, WxPython or Remi.
 site: http://www.PySimpleGUI.com
-keywords: [GUI, tkinter, pyside2, WxPython, Remi, documentation, cookbook, Trinkets, replit]
+keywords: [GUI, tkinter, pyside2, WxPython, Remi, documentation, cookbook, Trinkets,
+           replit]
 pypi_name: PySimpleGUI
diff --git a/packages/Quibbler.yml b/packages/Quibbler.yml
@@ -3,5 +3,6 @@ repo: Technion-Kishony-lab/quibbler
 section: interactivity
 description: Effortlessly make your matplotlib graphics interactive.
 site: https://github.com/Technion-Kishony-lab/quibbler
-keywords: [data, visualization, interactive, save, data analysis, matplotlib, plot, picker]
+keywords: [data, visualization, interactive, save, data analysis, matplotlib, plot,
+           picker]
 pypi_name: pyquibbler
diff --git a/packages/adjustText.yml b/packages/adjustText.yml
@@ -1,4 +1,4 @@
 name: adjustText
 repo: Phlya/adjustText
 section: plotting utilities
-description: Draw many text artists so that they do not overlap.
+description: Draw many text artists so that they do not overlap.
diff --git a/packages/aquarel.yml b/packages/aquarel.yml
@@ -1,7 +1,7 @@
 name: Aquarel
 repo: lgienapp/aquarel
 section: colormaps and styles
-description: Simplified wrapper for flexible styling and theming. 
+description: Simplified wrapper for flexible styling and theming.
 site: https://github.com/lgienapp/aquarel
 keywords: [styles]
 pypi_name: aquarel
diff --git a/packages/bgheatmaps.yaml b/packages/bgheatmaps.yaml
@@ -1,6 +1,6 @@
 name: BG Heatmaps
 repo: brainglobe/bg-heatmaps
 section: domain specific libraries
-description: Brain heatmaps visualization.
-keywords: [neuroscience, heatmaps, 3D] # optional
-pypi_name: bgheatmap # optional, default repo name
+description: Brain heatmap visualizations.
+keywords: [neuroscience, heatmaps, 3D]
+pypi_name: bgheatmap
diff --git a/packages/blume.yml b/packages/blume.yml
@@ -1,4 +1,4 @@
 name: Blume
 repo: swfiua/blume
 section: plot types
-description: Alternate table artist.
+description: Alternate table artist.
diff --git a/packages/cmasher.yml b/packages/cmasher.yml
@@ -3,7 +3,8 @@ repo: 1313e/CMasher
 site: https://cmasher.readthedocs.io
 section: colormaps and styles
 keywords: [styles, palettes, colormaps]
-description: Scientific colormaps for making accessible, informative and 'cmashing' plots.
+description: >-
+  Scientific colormaps for making accessible, informative and 'cmashing' plots.
 pypi_name: cmasher
 conda_package: cmasher
 conda_channel: conda-forge
diff --git a/packages/cmocean.yml b/packages/cmocean.yml
@@ -3,4 +3,4 @@ repo: matplotlib/cmocean
 site: https://matplotlib.org/cmocean/
 keywords: [styles, palettes, colormaps]
 section: colormaps and styles
-description:  Perceptually uniform colormaps for oceanographic variables.
+description: Perceptually uniform colormaps for oceanographic variables.
diff --git a/packages/colorcet.yml b/packages/colorcet.yml
@@ -1,7 +1,10 @@
 name: Colorcet
 repo: holoviz/colorcet
 section: colormaps and styles
-description: Perceptually uniform continuous colormaps and perceptually distinct categorical color sets.
+description: >-
+  Perceptually uniform continuous colormaps and perceptually distinct categorical
+  color sets.
 site: https://colorcet.holoviz.org
-keywords: [styles, palettes, colormaps, colorblind, cyclic, diverging, categorical, continuous]
+keywords: [styles, palettes, colormaps, colorblind, cyclic, diverging, categorical,
+           continuous]
 conda_channel: pyviz
diff --git a/packages/eomaps.yml b/packages/eomaps.yml
@@ -3,7 +3,7 @@ repo: raphaelquast/eomaps
 section: mapping
 description: A library to create interactive maps of geographical datasets.
 site: https://raphaelquast.github.io/EOmaps/
-keywords:  [interactive, mapping]
-pypi_name:  eomaps
-conda_package:  eomaps
-conda_channel:  conda-forge
+keywords: [interactive, mapping]
+pypi_name: eomaps
+conda_package: eomaps
+conda_channel: conda-forge
diff --git a/packages/farrow-and-ball.yml b/packages/farrow-and-ball.yml
@@ -3,4 +3,4 @@ repo: vork/farrowandball
 section: colormaps and styles
 description: Color palettes inspired by British paint manufacturer Farrow and Ball.
 keywords: [styles, palettes, colormaps]
-pypi_name:  farrow-and-ball
+pypi_name: farrow-and-ball
diff --git a/packages/figpager.yml b/packages/figpager.yml
@@ -1,4 +1,4 @@
 name: FigPager
 repo: ebenp/figpager
 section: plotting utilities
-description: Save plots with single or multiple pages.
+description: Save plots with single or multiple pages.
diff --git a/packages/gr.yml b/packages/gr.yml
@@ -2,4 +2,4 @@ name: gr
 repo: jheinen/gr
 section: backends
 description: Graphic kernel system backend.
-site: https://gr-framework.org/python.html
+site: https://gr-framework.org/python.html
diff --git a/packages/grid-strategy.yml b/packages/grid-strategy.yml
@@ -1,4 +1,4 @@
 name: grid-strategy
 repo: matplotlib/grid-strategy
 section: plotting utilities
-description: Create a grid of subplots based on the number of axes to be plotted.
+description: Create a grid of subplots based on the number of axes to be plotted.
diff --git a/packages/holoviews.yml b/packages/holoviews.yml
@@ -2,6 +2,8 @@ name: HoloViews
 repo: holoviz/holoviews
 section: alternative apis
 site: https://holoviews.org
-description: High-level API providing composable multidimensional or columnar data objects that visualize themselves.
+description: >-
+  High-level API providing composable multidimensional or columnar data objects that
+  visualize themselves.
 keywords: [jupyter, columnar, multidimensional]
 conda_channel: pyviz
diff --git a/packages/librosa.yml b/packages/librosa.yml
@@ -2,8 +2,8 @@ name: librosa
 repo: librosa/librosa
 section: domain specific libraries
 description: Audio signal processing with waveform and spectrogram displays
-site: https://librosa.org/ # optional, default repo site
-keywords: [signals, spectrograms] # optional
+site: https://librosa.org/
+keywords: [signals, spectrograms]
 pypi_name: librosa
 conda_package: librosa
 conda_channel: conda-forge
diff --git a/packages/lumen.yml b/packages/lumen.yml
@@ -2,6 +2,8 @@ name: Lumen
 repo: holoviz/lumen
 section: gui applications
 site: https://lumen.holoviz.org
-description: Declarative YAML or GUI specification for apps/dashboards with Matplotlib and other plots.
+description: >-
+  Declarative YAML or GUI specification for apps/dashboards with Matplotlib and other
+  plots.
 keywords: [dashboard, app]
 conda_channel: pyviz
diff --git a/packages/manimplotlib.yaml b/packages/manimplotlib.yaml
@@ -1,5 +1,5 @@
 name: manimplotlib
 repo: kolibril13/manimplotlib
 section: animations
-description: Collection of scripts to animate matplotlib plots with manim.
+description: Collection of scripts to animate Matplotlib plots with manim.
 site: https://manimplotlib.readthedocs.io/en/latest/
diff --git a/packages/matplotcheck.yml b/packages/matplotcheck.yml
@@ -3,7 +3,7 @@ repo: earthlab/matplotcheck
 section: miscellaneous
 description: A package designed to test matplotlib plots.
 site: https://matplotcheck.readthedocs.io
-keywords:  ["plot testing"]
-pypi_name:  matplotcheck
-conda_package:  matplotcheck
-conda_channel:  conda-forge
+keywords: ["plot testing"]
+pypi_name: matplotcheck
+conda_package: matplotcheck
+conda_channel: conda-forge
diff --git a/packages/microfilm.yml b/packages/microfilm.yml
@@ -3,5 +3,5 @@ repo: guiwitz/microfilm
 section: domain specific libraries
 description: 2D image plots and animations for multi-channel microscopy data.
 site: https://guiwitz.github.io/microfilm
-keywords: [microscopy, animations, composite] # optional
+keywords: [microscopy, animations, composite]
 pypi_name: microfilm
diff --git a/packages/mpl-template.yml b/packages/mpl-template.yml
@@ -2,4 +2,4 @@ name: mpl-template
 repo: austinorr/mpl-template
 section: plotting utilities
 description: Templating engine for consistent plots.
-site: https://austinorr.github.io/mpl-template/
+site: https://austinorr.github.io/mpl-template/
diff --git a/packages/mplhep.yml b/packages/mplhep.yml
@@ -1,7 +1,9 @@
 name: mplhep
 repo: scikit-hep/mplhep
 section: domain specific libraries
-description: Set of helpers for matplotlib to more easily produce plots typically needed in high energy physics.
+description: >-
+  Set of helpers for matplotlib to more easily produce plots typically needed in
+  high energy physics.
 site: https://mplhep.readthedocs.io/
 keywords: [physics, hep, scikit-hep]
 pypi_name: mplhep
diff --git a/packages/pandas.yml b/packages/pandas.yml
@@ -3,5 +3,7 @@ repo: pandas-dev/pandas
 site: https://pandas.pydata.org
 keywords: ["structured data", columnar, tabular, tables]
 section: alternative apis
-description: Tabular data analysis and manipulation tool providing a .plot() API for Matplotlib plotting.
+description: >-
+  Tabular data analysis and manipulation tool providing a .plot() API for Matplotlib
+  plotting.
 conda_channel: conda-forge
diff --git a/packages/patchworklib.yml b/packages/patchworklib.yml
@@ -2,4 +2,4 @@ name: patchworklib
 repo: ponnhide/patchworklib
 site: https://github.com/ponnhide/patchworklib
 section: plotting utilities
-description: A subplot manager for intuitive layouts 
+description: A subplot manager for intuitive layouts.
diff --git a/packages/planetmagfields.yml b/packages/planetmagfields.yml
@@ -2,4 +2,6 @@ name: planetMagFields
 repo: AnkitBarik/planetMagFields
 section: domain specific libraries
 keywords: ["magnetic field", "planetary science", "solar system"]
-description: Routines to easily access information about magnetic fields of planets in our solar system and visualize them in both 2D and 3D.
+description: >-
+  Routines to easily access information about magnetic fields of planets in our solar
+  system and visualize them in both 2D and 3D.
diff --git a/packages/plottable.yml b/packages/plottable.yml
@@ -1,6 +1,6 @@
 name: plottable
 repo: znstrider/plottable
 section: plot types
-description: Beautifully customized tables with matplotlib.
+description: Beautifully customized tables with Matplotlib.
 site: https://github.com/znstrider/plottable
 keywords: [table, tables, custom, styling, formatting, presentation]
diff --git a/packages/proplot.yml b/packages/proplot.yml
@@ -3,5 +3,6 @@ repo: lukelbd/proplot
 site: https://proplot.readthedocs.io/en/latest/
 keywords: [wrapper]
 section: plotting utilities
-description: A lightweight matplotlib wrapper for making beautiful, publication-quality graphics.
+description: >-
+  A lightweight Matplotlib wrapper for making beautiful, publication-quality graphics.
 conda_channel: conda-forge
diff --git a/packages/pyCircos.yml b/packages/pyCircos.yml
@@ -2,5 +2,5 @@ name: pyCircos
 repo: ponnhide/pyCircos
 site: https://github.com/ponnhide/pycircos
 section: domain specific libraries
-description: A visualization tool for designing circos plots 
+description: A visualization tool for designing circos plots.
 pypi_name: python-circos
diff --git a/packages/pygenomeviz.yml b/packages/pygenomeviz.yml
@@ -1,7 +1,7 @@
 name: pyGenomeViz
 repo: moshi4/pyGenomeViz
 section: domain specific libraries
-description: A genome visualization python package for comparative genomics
+description: A genome visualization python package for comparative genomics.
 site: https://moshi4.github.io/pyGenomeViz/
 keywords: [bioinformatics, genomics]
 pypi_name: pygenomeviz
diff --git a/packages/pymatviz.yml b/packages/pymatviz.yml
@@ -3,5 +3,6 @@ repo: janosh/pymatviz
 section: domain specific libraries
 description: A toolkit for visualizations in materials informatics.
 site: https://github.com/janosh/pymatviz
-keywords: [materials informatics, materials discovery, uncertainty-calibration, data viz]
-pypi_name: pymatviz
+keywords: [materials informatics, materials discovery, uncertainty-calibration,
+           data viz]
+pypi_name: pymatviz
diff --git a/packages/pyplutchik.yml b/packages/pyplutchik.yml
@@ -4,5 +4,5 @@ section: domain specific libraries
 description: Python visualisation for Plutchik annotated corpora.
 site: https://github.com/alfonsosemeraro/pyplutchik
 pypi_name: pyplutchik
-conda_package:  pyplutchik
-conda_channel:  conda-forge
+conda_package: pyplutchik
+conda_channel: conda-forge
diff --git a/packages/pyupset.yml b/packages/pyupset.yml
@@ -2,4 +2,4 @@ name: PyUpSet
 repo: ImSoErgodic/py-upset
 section: plot types
 description: UpSet suite of visualization methods.
-pypi_name: pyupset
+pypi_name: pyupset
diff --git a/packages/skunk.yml b/packages/skunk.yml
@@ -1,7 +1,9 @@
 name: skunk
 repo: whitead/skunk
 section: plotting utilities
-description: Insert SVG images into matplotlib elements. Can be used to also compose matplotlib plots by nesting them.
+description: >-
+  Insert SVG images into matplotlib elements. Can be used to also compose Matplotlib
+  plots by nesting them.
 site: https://github.com/whitead/skunk/
 keywords: [SVG]
 pypi_name: skunk
diff --git a/packages/sphinx-gallery.yml b/packages/sphinx-gallery.yml
@@ -1,5 +1,5 @@
 name: Sphinx-Gallery
 repo: sphinx-gallery/sphinx-gallery
 section: documentation
-description: Create matplotlib galleries for your sphinx-built documentation.
+description: Create Matplotlib galleries for your sphinx-built documentation.
 site: https://sphinx-gallery.github.io
diff --git a/packages/tueplots.yml b/packages/tueplots.yml
@@ -3,6 +3,5 @@ repo: pnkraemer/tueplots
 section: colormaps and styles
 description: Light-weight matplotlib styles for figures used in scientific publications.
 site: https://tueplots.readthedocs.io/en/latest/
-keywords: [styles] 
-pypi_name: tueplots 
-  
+keywords: [styles]
+pypi_name: tueplots
diff --git a/packages/viscm.yml b/packages/viscm.yml
@@ -1,4 +1,4 @@
 name: viscm
 repo: matplotlib/viscm
 section: colormaps and styles
-description: Tool for analyzing colormaps and creating new colormaps.
+description: Tool for analyzing colormaps and creating new colormaps.
diff --git a/packages/xarray.yml b/packages/xarray.yml
@@ -3,5 +3,7 @@ repo: pydata/xarray
 site: https://xarray.pydata.org
 keywords: ["structured data", "multi-dimensional arrays", "nD arrays"]
 section: alternative apis
-description: Multi-dimensional data analysis and manipulation tool providing a .plot() API for Matplotlib plotting.
+description: >-
+  Multi-dimensional data analysis and manipulation tool providing a .plot() API for
+  Matplotlib plotting.
 conda_channel: conda-forge
diff --git a/packages/xmovie.yml b/packages/xmovie.yml
@@ -2,7 +2,7 @@ name: xmovie
 repo: jbusecke/xmovie
 section: animations
 description: A simple way of creating beautiful movies from xarray objects.
-keywords:  xarray
-pypi_name:  xmovie
-conda_package:  xmovie
-conda_channel:  conda-forge
+keywords: xarray
+pypi_name: xmovie
+conda_package: xmovie
+conda_channel: conda-forge
diff --git a/packages/yellowbrick.yml b/packages/yellowbrick.yml
@@ -2,4 +2,5 @@ name: Yellowbrick
 repo: DistrictDataLabs/yellowbrick
 section: domain specific libraries
 site: https://www.scikit-yb.org
-description: Visual analysis and diagnostic tools to facilitate machine learning model selection.
+description: >-
+  Visual analysis and diagnostic tools to facilitate machine learning model selection.
diff --git a/python/build.py b/python/build.py
diff --git a/python/conda_downloads.py b/python/conda_downloads.py

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`@@ -1,4 +1,3 @@`
`1`		`----`
`2`	`1`	`name: "CircleCI artifact handling"`
`3`	`2`	`on: [status]`
`4`	`3`	`jobs:`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,3 @@`
`1`		`----`
`2`	`1`	`name: GitHub Pages`
`3`	`2`
`4`	`3`	`on:`