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deps: add papermill when initialising venv #13

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Merged
merged 1 commit into from
Jan 30, 2025
Merged

deps: add papermill when initialising venv #13

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20 changes: 10 additions & 10 deletions init-env.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -11,24 +11,24 @@ show_help() {
echo " --help/-h: Show this help message."
}

initialize_r() {
initialise_r() {
if [ "$FORCE" = true ] || [ ! -f "renv.lock" ]; then
Rscript -e 'renv::init(bare = FALSE)'
Rscript -e 'renv::install("rmarkdown")'
Rscript -e 'renv::snapshot(type = "all")'
fi
}

initialize_python() {
initialise_python() {
if [ "$FORCE" = true ] || [ ! -f "requirements.txt" ]; then
python3 -m venv .venv
source .venv/bin/activate
python3 -m pip install jupyter
python3 -m pip install jupyter papermill
python3 -m pip freeze > requirements.txt
fi
}

initialize_julia() {
initialise_julia() {
if [ "$FORCE" = true ] || [ ! -f "Project.toml" ]; then
julia -e 'using Pkg; Pkg.activate("."); Pkg.instantiate()'
julia --project=. -e 'using Pkg; Pkg.add("IJulia")'
Expand Down Expand Up @@ -62,18 +62,18 @@ done

case $WHAT in
all)
initialize_r
initialize_python
initialize_julia
initialise_r
initialise_python
initialise_julia
;;
r)
initialize_r
initialise_r
;;
python)
initialize_python
initialise_python
;;
julia)
initialize_julia
initialise_julia
;;
*)
echo "Unknown option for --what: $WHAT"
Expand Down