v0.2.1 Updating VS Code Workspaces, Codecov + various other changes

What's Changed

• BUG: Fix function to compute bounding box by @fepegar in #311
• ENH: Add flag pl_limit_test_batches by @mebristo in #317
• ENH: Add ability to override which checkpoint to use for inference by @ant0nsc in #313
• BUG: Use custom checkpoint for test stage in DeepMIL by @harshita-s in #318
• ENH: Refactor DeepMIL modules to support slide dataloader by @kenza-bouzid in #304
• BUG: Fix code to create the PANDAS tiles dataset by @fepegar in #321
• STYLE: Add some formatting settings for VS Code by @fepegar in #312
• STYLE: Rename panda_tiles to panda_tiles_small by @mebristo in #322
• BUG: Fix PathMNIST tests and add automatic rerun for CIFAR tests by @kenza-bouzid in #319
• ENH: Encoding in chunks to enable WSI validation and test by @harshita-s in #323
• ENH: Enable different train val test transformations by @vale-salvatelli in #324
• BUG: Add ability to override non-empty list params with empty by @mebristo in #330
• ENH: Enable selection of primary validation metric in BaseMIL by @dccastro in #332
• ENH: Add param 'wait_for_completion' to ExperimentConfig by @mebristo in #331
• ENH: Use VSCode workspaces to open projects by @ant0nsc in #328
• BUG: Update path to PANDA tiles directory by @fepegar in #325
• BUG: Update get_all_environment_files after environment.yml has moved by @mebristo in #334
• ENH: Validate the number of requested nodes for an AML job by @mebristo in #337
• ENH: Add template for multimodal package by @ant0nsc in #333
• ENH: Switch to Codecov by @ant0nsc in #340
• BUG: Update paths and columns for PANDA tiles dataset by @harshita-s in #344
• DOC: Add Codecov badge to README by @fepegar in #343
• BUG: Fix invalid environment file by @fepegar in #345
• STYLE: Ensure all files end with a newline by @fepegar in #347
• STYLE: Make code compliant with PEP8 by @fepegar in #349
• STYLE: Remove trailing whitespaces by @fepegar in #346
• BUG: Change bounding box location for PANDA heatmaps by @harshita-s in #350
• ENH: Separate workflow for histopathology by @ant0nsc in #354
• BUG: Fix problem with Test.PyPi upload filename conflicts by @ant0nsc in #358
• ENH: Clean-up of linter configurations by @ant0nsc in #356
• ENH: Add pl_limit_batches to TrainerConfigs. by @kenza-bouzid in #361
• BUG: Run WSI pipeline at scale. by @kenza-bouzid in #357
• BUG: Make files with shebang executable by @fepegar in #348
• ENH: Add outputs for visualization of attention heatmaps on DSA by @harshita-s in #355
• ENH: Group code coverage by folder by @ant0nsc in #368
• ENH: Run WSI pipeline without a fixed tile_count by @kenza-bouzid in #365
• ENH: Add pre-commit config file by @fepegar in #371
• DOC: Extend coding guidelines by @ant0nsc in #298
• ENH: Add log text reader function by @peterhessey in #367
• BUG: VSCode uses wrong value for Python path in terminal by @ant0nsc in #375

New Contributors

• @peterhessey made their first contribution in #367

Full Changelog: v0.2.0...v0.2.1