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v3.0.6

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  • 7a57c68
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  • v3.0.6
  • 7a57c68
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  • Verified

    This commit was created on GitHub.com and signed with GitHub’s verified signature.
@FlynnOConnell FlynnOConnell tagged this 15 May 00:24
* rechunk script

* consolidate isoview arrays - expose public api

* add background imgs and orig xml's

* consolidate corrected/fused

* Add GPU selector and persisted Options popup

- mbo view --list-gpus / --gpu N CLI flags (cli.py)
- ~/.mbo/settings/preferences.json "options" block with gpu_index and
  debug_logging keys, plus get/set helpers (preferences.py)
- "Options" button + popup in the launch dialog with GPU adapter dropdown
  and Debug logging checkbox, both persisted on change (file_dialog.py)
- Persisted choices applied at every launch in _run_gui_impl, including
  direct-path launches that skip the dialog (run_gui.py)

* Wrap dialog tooltips and overflow text to fit dialog width

- Add wrapped_tooltip() helper using begin_tooltip + push_text_wrap_pos
  so long tooltips wrap to ~24em instead of running off the right edge.
- Add text_wrapped_colored() for inline status / hint lines.
- Replace every imgui.set_tooltip() in FileDialog with wrapped_tooltip().
- Wrap the cupy `uv pip install ...` hint onto its own line with a
  proper Copy button (was running off the dialog on `same_line`).
- Wrap dependency / Rastermap status lines so they don't overflow when
  GPU/CPU labels stack up.

* move isoview code into arrays/isoview/ package

* update arrays

* add popup autosize helper and adopt across popups

* extract shared options popup for file dialog and preview widget

* add --gpu cli flag to set and persist gpu adapter

* add isoview pipeline widget and worker tasks

* add parallel plane processing to suite2p pipeline

* fix zstats numpy truthiness and tidy summary image helpers

* add gpu / sys info to process console

* remove zstats channel selector, always sync to c slider

* drop h5 dataset_name kwarg tests

* recurse into directory containers when sizing dataset files

* use tolist on numpy plane groups so json.dump accepts them

* cache gpu adapters at startup to avoid wgpu init flicker

* clamp default figure size to screen work area

* rework isoview fused output: .fused/<method> path and zarr layout reorg

* add bigstitcher v2 mirror and generate_bigstitcher_xml task

* add isoview crop widget

* rework isoview run tab: dataset summary, output options, slicing, crop, bigstitcher mode

* bump lbm-suite2p-python pin to 3.0.6

* replace parallel processing toggle with workers and threads_per_worker controls

* add parallel processing controls and split lbm-suite2p-python into its own settings column

* forward parallel kwargs from gui to lsp pipeline and add bigstitcher register task

* add isoview segment widget

* set isoview-aware vmin and vmax presets in image widget

* update isoview crop widget

* update isoview pipeline widget

* isoview dead pixel correction

* bump 3.0.5

* arrays/isoview: accept .corrected* suffix variants and probe per-view shapes

* gui/tasks: fall back to '.' when output_dir is none

* gui/isoview_crop: replace drags with sliders, add apply-to-all, re-seed state on open

* gui/isoview seg+deadpixel: show per-camera previews on raw datasets

* gui/isoview pipelines: resolve correct-mode output path, move crop into parameters popup

* update front flag, sync default params

* bump v3.0.6
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