Again the issue with ODF calculation with new Matlab on Mac

[3oja]

Hi all,

I recently installed the new Matlab (R2025b) on Mac (M1), and it again fails to calculate the ODF. It worked perfectly before the installation of the new Matlab.
I did the mex_install('force'), and it says that all was successfully compiled. If I would do the installation check after compilation, it would say that nfftmex.mexmaca64 and wignerTrafomex.mexmaca64 have failed.

Any tips would be highly appreciated!

Zoja

[ralfHielscher]

Can you post the result of check_mex

[3oja]

Hi Ralf,
Thank you for reaching out. I run the check_mex after I already run mex_install('force')

Here is the result of check_mex:

Mex files are compiled binaries that are used within MTEX to speed up time critical computations. As mex files are specific to different operating systems it is not so easy for us
to provide working binaries for different types of systems.
checking: jcvoronoi_mex.mexmaca64 ok
checking: EulerCyclesC.mexmaca64Warning: grains.grainSize is depreciated. Please use grains.numPixel instead

In [grain2d/set.grainSize](matlab:matlab.lang.internal.introspective.errorDocCallback('grain2d/set.grainSize', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@grain2d/grain2d.m', 181)) ([line 181](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@grain2d/grain2d.m',181,0)))
In [indexing](matlab:matlab.lang.internal.introspective.errorDocCallback('grain2d/subsasgn', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@grain2d/subsasgn.m', 53)) ([line 53](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@grain2d/subsasgn.m',53,0)))
In [EBSD/calcGrains](matlab:matlab.lang.internal.introspective.errorDocCallback('EBSD/calcGrains', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@EBSD/calcGrains.m', 169)) ([line 169](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@EBSD/calcGrains.m',169,0)))
In [check_mex>check_EulerCyclesC](matlab:matlab.lang.internal.introspective.errorDocCallback('check_mex>check_EulerCyclesC', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/tests/check_mex.m', 126)) ([line 126](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/tests/check_mex.m',126,0)))
In [check_mex](matlab:matlab.lang.internal.introspective.errorDocCallback('check_mex', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/tests/check_mex.m', 62)) ([line 62](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/tests/check_mex.m',62,0)))
Warning: grains.grainSize is depreciated. Please use grains.numPixel instead
In [grain2d/get.grainSize](matlab:matlab.lang.internal.introspective.errorDocCallback('grain2d/get.grainSize', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@grain2d/grain2d.m', 176)) ([line 176](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@grain2d/grain2d.m',176,0)))
In [indexing](matlab:matlab.lang.internal.introspective.errorDocCallback('grain2d/subsref', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@grain2d/subsref.m', 83)) ([line 83](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@grain2d/subsref.m',83,0)))
In [EBSD/calcGrains](matlab:matlab.lang.internal.introspective.errorDocCallback('EBSD/calcGrains', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@EBSD/calcGrains.m', 186)) ([line 186](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/EBSDAnalysis/@EBSD/calcGrains.m',186,0)))
In [check_mex>check_EulerCyclesC](matlab:matlab.lang.internal.introspective.errorDocCallback('check_mex>check_EulerCyclesC', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/tests/check_mex.m', 126)) ([line 126](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/tests/check_mex.m',126,0)))
In [check_mex](matlab:matlab.lang.internal.introspective.errorDocCallback('check_mex', '/Users/qef22dcu/Documents/mtex-6.2.beta.3/tests/check_mex.m', 62)) ([line 62](matlab: opentoline('/Users/qef22dcu/Documents/mtex-6.2.beta.3/tests/check_mex.m',62,0)))
ok
checking: insidepoly_dblengine.mexmaca64 ok
checking: S1Grid_find.mexmaca64 ok
checking: S1Grid_find_region.mexmaca64 ok
checking: S2Grid_find.mexmaca64 ok
checking: S2Grid_find_region.mexmaca64 ok
checking: SO3Grid_dist_region.mexmaca64 ok
checking: SO3Grid_find.mexmaca64 ok
checking: SO3Grid_find_region.mexmaca64 ok
checking: nfftmex.mexmaca64 failed

--> [Invalid MEX-file '/Users/qef22dcu/Documents/mtex-6.2.beta.3/mex/nfftmex.mexmaca64': dlopen(/Users/qef22dcu/Documents/mtex-6.2.beta.3/mex/nfftmex.mexmaca64, 0x0006): Library not loaded: /opt/homebrew/opt/gcc/lib/gcc/current/libgomp.1.dylib](matlab: rethrow(pullTemp(3)))
[ Referenced from: <4FAB744D-B5E2-3EC9-A3CB-10633659221B> /Users/qef22dcu/Documents/mtex-6.2.beta.3/mex/nfftmex.mexmaca64](matlab: rethrow(pullTemp(3)))
[ Reason: tried: '/opt/homebrew/opt/gcc/lib/gcc/current/libgomp.1.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/opt/gcc/lib/gcc/current/libgomp.1.dylib' (no such file), '/opt/homebrew/opt/gcc/lib/gcc/current/libgomp.1.dylib' (no such file), '/usr/local/lib/libgomp.1.dylib' (no such file), '/usr/lib/libgomp.1.dylib' (no such file, not in dyld cache)](matlab: rethrow(pullTemp(3)))
checking: fptmex.mexmaca64 ok
checking: nfsftmex.mexmaca64 ok
checking: nfsoftmex.mexmaca64 ok
checking: wignerTrafoAdjointmex.mexmaca64 ok
checking: wignerTrafomex.mexmaca64 failed

--> [Invalid MEX-file '/Users/qef22dcu/Documents/mtex-6.2.beta.3/mex/nfftmex.mexmaca64': dlopen(/Users/qef22dcu/Documents/mtex-6.2.beta.3/mex/nfftmex.mexmaca64, 0x0006): Library not loaded: /opt/homebrew/opt/gcc/lib/gcc/current/libgomp.1.dylib](matlab: rethrow(pullTemp(4)))
[ Referenced from: <4FAB744D-B5E2-3EC9-A3CB-10633659221B> /Users/qef22dcu/Documents/mtex-6.2.beta.3/mex/nfftmex.mexmaca64](matlab: rethrow(pullTemp(4)))
[ Reason: tried: '/opt/homebrew/opt/gcc/lib/gcc/current/libgomp.1.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/opt/gcc/lib/gcc/current/libgomp.1.dylib' (no such file), '/opt/homebrew/opt/gcc/lib/gcc/current/libgomp.1.dylib' (no such file), '/usr/local/lib/libgomp.1.dylib' (no such file), '/usr/lib/libgomp.1.dylib' (no such file, not in dyld cache)](matlab: rethrow(pullTemp(4)))
checking: numericalSaddlepointWithDerivatives.mexmaca64 ok
checking: SHTextractormex.mexmaca64 ok
Not all mex files are running. You might want to call
[mex_install('force')](matlab: mex_install('force'))
to compile the mex files yourself.
On a Mac this requires to install XCode first!

Also, I get same errors if I run the mtex 6.1.0 version.

Zoja

[3oja]

A bit of an update, I re-installed the last Matlab that was working for me 2024b (and Mtex 6.1) , and it still fails to finish compiling. I got this error message now:
everything before was successfully compiled.

• SHTextractormex.cpp is compiling
  Building with 'Xcode Clang++'.
  Error using mex
  Undefined symbols for architecture arm64:
  "_mexCreateMexFunction", referenced from:
  
  "_mexDestroyMexFunction", referenced from:
  
  "_mexFunctionAdapter", referenced from:
  
  ld: symbol(s) not found for architecture arm64
  clang++: error: linker command failed with exit code 1 (use -v to see invocation)