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Junke Kris Wang edited this page May 30, 2025 · 59 revisions

Welcome to the 2025 Cold Spring Harbor Single Cell Course wiki! (Navin lab parts).

We'll be covering most of the single-cell RNA seq and spatial transcriptomics parts of the course. Here are the list of workshops:

Workshop Instructors
1.1 scDNA: CopyKit Kris Wang
2.1 scRNA: Processing Basics Lei Yang and Jerome Lin
2.2 scRNA: Copy Number Inference Rui Ye
2.3 scRNA: Integration Ryan Mulqueen and Lei Yang
3.1 Spatial RNA: VisiumHD Chenling Tang and Aatish Thennavan
Lecture Instructors
Single Cell Genomics Overview Nick Navin
Introduction of R basics Kris Wang
Introduction to Spatial Transcriptomics Ping Xu
scDNA data analysis using CopyKit Kris Wang

Thanks from the Navin lab team and hopefully it goes smoothly!!

Our on-site instructors:

Nick Aatish Ryan Lei Kris Rui
Nick

Our off-site instructors:

Mitchell Chenling Jerome

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