Phylogenomics of Acoelomorpha
Objective: solve the phylogenetic position of acoels and nemertodermatids. Read more.
- Developed a script/module to search and filter SRA records.
- Searched and got a list of SRA packages.
- Tested workflow with a few organisms.
- Defined curation criteria: if unique, yes; if multiple, pick mixed tissues; if tissue specific, merge multiple until 40M reads.
- Running assemblies.
- Continue building assemblies.
- Solve issues like quality offset, no rRNA, too large samples, multiple samples.
- Define list of additional RNAseq assemblies.
- Define list of additional genomic assemblies.
- Study phylogenetics.