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Effort to solve the position of acoels in the animal tree of life.
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sra
README.md
description.md

README.md

Phylogenomics of Acoelomorpha

Objective: solve the phylogenetic position of acoels and nemertodermatids. Read more.

Progress:

  • Developed a script/module to search and filter SRA records.
  • Searched and got a list of SRA packages.
  • Tested workflow with a few organisms.
  • Defined curation criteria: if unique, yes; if multiple, pick mixed tissues; if tissue specific, merge multiple until 40M reads.
  • Running assemblies.

Plan:

  • Continue building assemblies.
  • Solve issues like quality offset, no rRNA, too large samples, multiple samples.
  • Define list of additional RNAseq assemblies.
  • Define list of additional genomic assemblies.
  • Study phylogenetics.
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