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Fix serotype annotation for MT597439 #55

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merged 1 commit into from
May 21, 2024

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@j23414 j23414 commented May 21, 2024

Description of proposed changes

Fixes: #54

MT597439 is incorrectly annotated as /organism="dengue virus type 2" in NCBI but should be /organism="dengue virus type 4" based on the submitter's publication where they correctly assign it as DENV4/II (See Fig 1b, sample 43257 highlighted in yellow).

Separately, someone will be requesting that NCBI to correct this entry. But this commit manually corrects the serotype annotation in the annotations.tsv file in the meanwhile.

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@j23414 j23414 linked an issue May 21, 2024 that may be closed by this pull request
@j23414 j23414 requested a review from a team May 21, 2024 17:29
@j23414 j23414 force-pushed the 54-correct-ncbi-serotype-for-mt597439 branch from 119d3fa to 0e2b923 Compare May 21, 2024 17:44
MT597439 incorrectly annotated as /organism="dengue virus type 2" in NCBI
but should be /organism="dengue virus type 4" based on the submitter publication
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7952331/ where they correctly assign
it as DENV4/II (See Fig 1b, sample 43257 highlighted in yellow).

Separately, someone will be requesting that NCBI to correct this entry. But this commit
manually corrects the serotype annotation in the annotations.tsv file in the meantime.

Update exclude file since MT597439 no longer divergent in the denv4 tree
@j23414 j23414 force-pushed the 54-correct-ncbi-serotype-for-mt597439 branch from 0e2b923 to ba72b9d Compare May 21, 2024 20:59
@j23414 j23414 merged commit 074394d into main May 21, 2024
32 checks passed
@j23414 j23414 deleted the 54-correct-ncbi-serotype-for-mt597439 branch May 21, 2024 21:16
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Word of caution for genome MT597439
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