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v2.7.0 nf-core/bacass - "Scarlet Brass Nautilus" (2026/10/27)

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@Daniel-VM Daniel-VM released this 03 Nov 18:35
ce30c3a

Changed

  • #329 Update module Nanoplot (to 1.48.0).
  • #310 Use nf-core Medaka, add BUSCO to MultiQC, and fix Dragonflye channels
  • #316 Reorganize result output directories
  • #317 Improve MultiQC assembly summary tables
  • #324 Improved kmerfinder_summary_download subworkflow for correct reference matching
  • #326 Fix/busco ci network stability
  • #315 Replace MultiQC general statistics with custom tables better suited to per-sample --assembly_type routing and the multi-assembler strategy
  • #315 Default --assembly_type is now auto, detecting each sample's read type and running compatible assemblers
  • #315 Rename Miniasm/Racon consensus assemblies from *.consensus.fasta.gz to *_assembly_consensus.fasta.gz

Added

  • #329 Prepare release 2.7.0
  • #310 Add BUSCO output to MultiQC
  • #314 Add stub support for modules used in stub-run testing
  • #315 Add --assembly_type_label to suffix automatically routed output sample IDs with -short, -long, or -hybrid

Fixed

  • #335 Fix test data path and add missing citations
  • #332 Fix NanoPlot output collisions in auto mode
  • #291 Fix BUSCO busco_downloads publish errors and publish only summary/log files
  • #315 Fix Medaka nf-test to avoid launching polishing when skip_polish=true
  • #315 Restore Medaka and Nanopolish polishing for hybrid assemblies while respecting --skip_polish
  • #315 Skip Canu when gsize is missing
  • #315 Accept raw-base and k, m, or g genome sizes in the samplesheet
  • #315 Retain QUAST genome-fraction metrics when a reference is provided and KmerFinder is skipped

Dependencies

Tool Previous version New version
Canu 2.2 2.3
Medaka 2.2.1 2.2.2
Nanoplot 1.46.1 1.48.0

Deprecated