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2.7.0
v2.7.0 nf-core/bacass - "Scarlet Brass Nautilus" (2026/10/27)
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Changed
#329 Update module Nanoplot (to 1.48.0).
#310 Use nf-core Medaka, add BUSCO to MultiQC, and fix Dragonflye channels
#316 Reorganize result output directories
#317 Improve MultiQC assembly summary tables
#324 Improved kmerfinder_summary_download subworkflow for correct reference matching
#326 Fix/busco ci network stability
#315 Replace MultiQC general statistics with custom tables better suited to per-sample --assembly_type routing and the multi-assembler strategy
#315 Default --assembly_type is now auto, detecting each sample's read type and running compatible assemblers
#315 Rename Miniasm/Racon consensus assemblies from *.consensus.fasta.gz to *_assembly_consensus.fasta.gz
Added
#329 Prepare release 2.7.0
#310 Add BUSCO output to MultiQC
#314 Add stub support for modules used in stub-run testing
#315 Add --assembly_type_label to suffix automatically routed output sample IDs with -short, -long, or -hybrid
Fixed
#335 Fix test data path and add missing citations
#332 Fix NanoPlot output collisions in auto mode
#291 Fix BUSCO busco_downloads publish errors and publish only summary/log files
#315 Fix Medaka nf-test to avoid launching polishing when skip_polish=true
#315 Restore Medaka and Nanopolish polishing for hybrid assemblies while respecting --skip_polish
#315 Skip Canu when gsize is missing
#315 Accept raw-base and k, m, or g genome sizes in the samplesheet
#315 Retain QUAST genome-fraction metrics when a reference is provided and KmerFinder is skipped
Dependencies
Tool
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Canu
2.2
2.3
Medaka
2.2.1
2.2.2
Nanoplot
1.46.1
1.48.0
Deprecated
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