nf-core/createpanelrefs 1.1.0 - Abisko

What's Changed

• zenodo DOI by @maxulysse in #89
• Back to dev by @maxulysse in #90
• Add AGENTS.md file with nf-core agent instructions by @maxulysse in #91
• Remove vulnerable PR-comment artifact pattern by @mashehu in #93
• Important! Template update for nf-core/tools v4.0.3 by @nf-core-bot in #92
• Switch fix-linting to the hardened nf-core/actions reusable workflow by @mashehu in #97
• Move seqeralabs/action-tower-launch to @v2 (v2.4.0) by @mashehu in #98
• Important! Template update for nf-core/tools v4.1.0 by @nf-core-bot in #95
• Important! Template update for nf-core/tools v4.1.0 by @nf-core-bot in #96
• Important! Template update for nf-core/tools v4.2.1 by @nf-core-bot in #99
• Update all modules by @maxulysse in #100
• Prepare release 1.1.0 by @maxulysse in #101
• Add metro map made with nf-metro by @maxulysse in #102
• Add --cnvkit_method to set the CNVkit batch sequencing method by @maxulysse in #103
• Add --cnvkit_annotate to label CNVkit target regions with gene names by @maxulysse in #104
• Add --gens_mosdepth_fast_mode to toggle mosdepth --fast-mode for long-read GENS PoN by @maxulysse in #105
• Format pipeline Nextflow code and configs with nextflow lint -format by @maxulysse in #106
• Update nf-core-utils to 0.7.0 and pin nf-schema in AWS full test by @maxulysse in #107
• Address 1.1.0 release review by @maxulysse in #110
• Drop nallo mention from --gens_mosdepth_fast_mode docs by @maxulysse in #109
• Run GENS tests as the calling user instead of root by @maxulysse in #111
• Fix GENS tests on CI: mount passwd and group for GATK4_CREATEREADCOUNTPANELOFNORMALS by @maxulysse in #112

New Contributors

• @mashehu made their first contribution in #93

Full Changelog: 1.0.0...1.1.0