1.1.0

1.1.0

Note: sanitizeOutput snapshots will need to be updated due to a fix with unstableKeys when passing directories

New features

• Add ignoreKeys for sanitizeOutput and key presence check. Add jupiter test.
• Add readsMD5Keys and variantsMD5Keys for sanitizeOutput so that md5 is the one from the reads and from the variants.
• Add unstablePattern and ignorePattern to sanitizeOutput for more fine grained parsing.

Fixed

• Fix unstableKeys usage for sanitizeOutput when a folder is passed.
• Fix linting with mvn checkstyle:check and change folder structure.
• Use glob pattern instead of regex pattern for ignorePattern and unstablePattern.
• Update github action to use environment and cache. Add linting and bug check to maven plugin lifecycle.
• Fix nfcoreInitialise() to be compatible with nf-core tools 4.1.0, which now also expects a conf/ directory in the library.