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Some users requested that Sarek produce a VCF-file which is the "intersection" of the VCF-files from the different variant-callers. Additional description can be found here:
@FriederikeHanssen : Well, I'm not sure about that 🤔 In #792 I'm using bfctools concat and in this issue #809 we want to use bcftools isec, but first solving #792 should make it easier to solve #809 which is a very similar issue.
Description of feature
Some users requested that Sarek produce a VCF-file which is the "intersection" of the VCF-files from the different variant-callers. Additional description can be found here:
https://nfcore.slack.com/archives/CGFUX04HZ/p1667579492003829
@adamrtalbot and @drpatelh suggest using
bcftools isec
for this.This is somewhat similar to the following issue which we plan to solve using
bcftools concat
: #738The text was updated successfully, but these errors were encountered: