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fix no_intervals for HaplotypeCaller #189

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merged 8 commits into from
Apr 17, 2020
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nf-core/sarek pull request

While trying to reproduce #187 I stumbled into an issue with HaplotypeCaller.
Here is the fix

Many thanks for contributing to nf-core/sarek!

Please fill in the appropriate checklist below (delete whatever is not relevant).
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PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repo
  • Ensure the test suite passes (nextflow run . -profile test,docker).
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@maxulysse maxulysse added this to the 2.6 milestone Apr 17, 2020
@maxulysse maxulysse requested a review from a team April 17, 2020 12:30
@maxulysse maxulysse merged commit d553d0f into nf-core:dev Apr 17, 2020
@maxulysse maxulysse deleted the Freebayes branch April 17, 2020 13:30
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2 participants