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Added
- Add process to download pretrained models by @alihamraoui in #37
- Add GPU support for Cellpose by @alihamraoui in #39
- Add a parameter to pass kwargs to the sopa reader by @quentinblampey in #43
Updated
- Updated all containers - including baysor (using the baysor-cpp bioconda recipe) by @alihamraoui in #45
- Update sopa to 2.2.11 and rebuild the Wave conainers by @alihamraoui in #36
Minor updates
- validation of segmentation method combinations by @alihamraoui in #38
- Switch fix-linting to the hardened nf-core/actions reusable workflow by @mashehu in #40
- Move seqeralabs/action-tower-launch to @v2 (v2.4.0) by @mashehu in #41
- pin scanpy to v1.12.4 by @alihamraoui in #47
- Template update for nf-core/tools v4.2.1 by @nf-core-bot in #44
Full Changelog: 1.0.1...1.0.2