TEST_ctf_data

This data is downsampled sections of CTF data

To Use in code

Within your code's test folder run the following command. Then do git status and add the new submodule link to a commit.

git submodule add https://github.com/nih-megcore/TEST_ctf_data.git test_data

Pull your code and testing data

git clone --recurse-submodules YOUR_CODE_REPO

This was created using the following function

(its messy but it should be reproducible)

Pull from OpenNeuro

datalad install https://github.com/OpenNeuroDatasets/ds004215.git
cd ds004215
git checkout 1.0.2
cd ds004215/sub-ON02747/ses-01/meg
datalad get *.ds

CTF functions

newDs -resample 4 -time 100 160 /data/ds004215/sub-ON02747/ses-01/meg/sub-ON02747_ses-01_task-airpuff_run-01_meg.ds /data/ds004215/sub-ON02747_ses-01_task-airpuff_run-01_meg.ds
newDs -resample 4 -time 100 160 /data/ds004215/sub-ON02747/ses-01/meg/sub-ON02747_ses-01_task-haririhammer_run-01_meg.ds /data/ds004215/sub-ON02747_ses-01_task-haririhammer_run-01_meg.ds

mkdir -p ../PREBIDS/20010101
mv sub-ON02747_ses-01_task-* ../PREBIDS/20010101/
cd ../PREBIDS/20010101/
mvDs sub-ON02747_ses-01_task-airpuff_run-01_meg.ds  ABABABAB_airpuff_20010101_001.ds
mvDs sub-ON02747_ses-01_task-haririhammer_run-01_meg.ds  ABABABAB_haririhammer_20010101_002.ds

AFNI functions

AFNI command to reface MRI data

@afni_refacer_run -input sub-ON02747_ses-01_acq-MPRAGE_T1w.nii.gz -mode_reface_plus -prefix ABABABAB -no_images