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Here's an example. In this case, input_image
is a File()
, while transforms
is an InputMultiPath(File())
.
In [21]: ants.ApplyTransforms.help()
Wraps command **antsApplyTransforms**
...
[Mandatory]
input_image: (an existing file name)
image to apply transformation to (generally a coregistered
functional)
...
transforms: (an existing file name)
...
It looks like this is happening in nipype.interfaces.base.BaseInterface._get_trait_desc
, which tries to set each input to None
and then harvests a description of what it should have been set to from the ensuing exception's info
attribute. Unfortunately, this happens:
In [1]: import nipype.interfaces.ants as ants
In [2]: import pdb
In [3]: pdb.run('ants.ApplyTransforms.help()')
> <string>(1)<module>()
(Pdb) b nipype/interfaces/base:740, name in ('input_image', 'transforms')
Breakpoint 1 at /home/schwabacher/.local/lib/python2.6/site-packages/nipype/interfaces/base.py:740
(Pdb) c
> /home/schwabacher/.local/lib/python2.6/site-packages/nipype/interfaces/base.py(740)_get_trait_desc()
-> def_val = ''
(Pdb) p excp
TraitError("The 'input_image' trait of an ApplyTransformsInputSpec instance must be an existing file name, but a value of None <type 'NoneType'> was specified.",)
(Pdb) p excp.info
'an existing file name'
(Pdb) c
> /home/schwabacher/.local/lib/python2.6/site-packages/nipype/interfaces/base.py(740)_get_trait_desc()
-> def_val = ''
(Pdb) p excp
TraitError("Each element of the 'transforms' trait of an ApplyTransformsInputSpec instance must be an existing file name, but a value of None <type 'NoneType'> was specified.",)
(Pdb) p excp.info
'an existing file name'
(The breakpoint is set at line 763 of current master)
I'm not sure how best to handle this, since I'm not optimistic about finding the perfect snippet of text in the traits package, but I hope it doesn't get forgotten in #755.
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