Summaries of likelihood profiles #283
kellijohnson-NOAA
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Summarizing a likelihood profile is often done using a specialized figure and potentially a table, though the latter is less common. We are currently merging FIMSdiags into FIMS, where FIMSdiags has
plot_likelihood(). All of the necessary information is in the FIMS output tibble so it would be great if {stockplotr} took over this figure and if the information could also be made available from other models. Though, there is a FIMS Discussion that cautions how profiles are not good for models with random effects.How does everyone summarize their likelihood profiles. What, of these, methods should be in {stockplotr}. Should we start by moving R/plot_likelihoods.R from FIMS to stockplotr? Feel free to post images of plots or tables that you like. Below is the image of what the current FIMS function generates, which indicates log_devs contribute to the estimate of R_zero.

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