Create a distance matrix for Paul Lewis's MLCalc program from a fasta-formatted sequence file
$ ./Fasta2MLCalc.pl input.fas > matrix.dat
Type 'perldoc Fasta2MLCalc.pl' for details.
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Fasta2MLCalc.pl-- Perl script -
input.fas-- example input file -
matrix.dat-- example output file
The MLCalc software can be found here (Accessed Tue 24 mar 2020 16:40:21):
http://hydrodictyon.eeb.uconn.edu/people/plewis/downloads/mlcalc.zip
MLCalc is a Windows software but can be run on Linux (tested on Xubuntu 18.04) using Wine (http://www.winehq.org/):
$ wget http://hydrodictyon.eeb.uconn.edu/people/plewis/downloads/mlcalc.zip
$ unzip mlcalc.zip
$ cd mlcalc
$ wine mlcalc.exe