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seqSight Database
Xinyang Zhang edited this page Oct 26, 2023
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Downloading the databases is a required step if your input is a filtered shotgun sequencing metagenome file (fastq, fastq.gz, fasta, or fasta.gz format) and you don't have your own reference database.
seqSight_database --download <database> <build> <install_location>
NOTE: The seqSight config file will be updated to point to this location for the default database. If you move this database, please use the "seqSight_config" command to update the default location of this database.
seqSight_database --download <database> <build> <install_location> --update-config yes
seqSight_database --available
| Databases | build | location |
|---|---|---|
| BGC | MIBiG | https://gwu.box.com/shared/static/s9g2v012kyy97p50juy4boybeojrfhda.gz |
| fungi | fungiBt2 | https://gwu.box.com/shared/static/oaah1cv3ujdrirc9b3yoovqok6k8nyw9.gz |
| human | GRCh38Bt2 | https://gwu.box.com/shared/static/b0uu1sqyk1y6rb4wzllssxv1vox84205.gz |
| human | T2T-CHM13Bt2 | |
| viral | viralBt2 | https://gwu.box.com/shared/static/pho5jc7nwbr00hxqboxew7zrug4p6bvf.gz |
| bacterial | bacterialBt2 | https://gwu.box.com/shared/static/ibzpdz9fac2twxssquunp99rcld9aaf5.gz |
| archaeal | archaealBt2 | https://gwu.box.com/shared/static/l4wcu0z3nz4lsd222i64ii2miam2ordb.gz |