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An ontology to standardize and integrate ICE information and to support computer-assisted reasoning

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ICEO

A biological ontology to represent, standardize, and integrate bacterial integrative and conjugative elements (ICEs) and to support computer-assisted reasoning.

The integrative and conjugative elements (ICEs) are modular mobile genetic elements that are integrated into a host genome and are passively propagated during chromosomal replication and cell division. We generated an ICE database called ICEberg (http://db-mml.sjtu.edu.cn/ICEberg/). The ICEO is developed to first systematically represent the ICE information collected in the database. The ICEO will also be further used to enhance the ICEberg and support various applications.

This GitHub website is the home page of ICEO.

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Note that the source ontology is an OWL file.

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  • Meng Liu#, Jialin Liu#, Guitian Liu, Hui Wang, Xiaoli Wang, Zixin Deng, Yongqun He, Hong-Yu Ou. ICEO, a biological ontology for representing and analyzing the bacterial integrative and conjugative element. Scientific Data, 2022, 9(1):11.
  • Meng Liu, Hong-Yu Ou and Yongqun He. ICEO: a biological ontology for representing and analyzing the bacterial integrative and conjugative element. The 10th International Conference on Biomedical Ontology (ICBO-2019), July 30-August 2, 2019, at Buffalo, NY, USA. Full length paper.

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An ontology to standardize and integrate ICE information and to support computer-assisted reasoning

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