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Velocyto: use debian bookworm instead of trixie. #1063

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Merged
merged 2 commits into from
Aug 18, 2025
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Velocyto: use debian bookworm instead of trixie. #1063

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Velocyto: use debian bookworm instead of trixie.
DriesSchaumont Aug 18, 2025
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Update CHANGELOG
DriesSchaumont Aug 18, 2025
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -47,6 +47,8 @@ Warning: These experimental features are subject to change in future releases.

## MINOR CHANGES

* `velocyto`: pin base container to `python:3.10-slim-bookworm` (PR #1063).

* `mapping/cellranger_multi`: The output from Cell Ranger is now displayed as Cell Ranger is running (PR #1045).

* Remove `workflows` directory (PR #993). The workflows which were at one point in this directory were all deprecated and moved to `src/workflows`.
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2 changes: 1 addition & 1 deletion src/velocity/velocyto/config.vsh.yaml
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Expand Up @@ -54,7 +54,7 @@ test_resources:

engines:
- type: docker
image: python:3.10-slim
image: python:3.10-slim-bookworm
setup:
- type: apt
packages:
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