Skip to content

@HallLab Hall Lab

Change the repository type filter

All

    Repositories list

    21 repositories

    • clarite-python

      Public
      CLeaning to Analysis: Reproducibility-based Interface for Traits and Exposures
      bioinformaticsstatisticspandas
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•10•6•Updated Feb 11, 2026Feb 11, 2026

    • PheEWAS_paper

      Public
      Files and code used for the first PheEWAS manuscript
      Jupyter Notebook
      •0•0•0•0•Updated Feb 7, 2026Feb 7, 2026

    • MyNHANES

      Public
      A reproducible data pipeline for NHANES: ingestion, curation, and transformation of health survey datasets.
      Python
      •
      MIT License
      •0•1•1•0•Updated Jun 24, 2025Jun 24, 2025

    • MyNHANES_DataHub

      Public
      Host MyNHANES Master Data and Normalizations Rules
      0•0•0•0•Updated Jun 23, 2025Jun 23, 2025

    • IGEM

      Public
      Full version of IGEM with features likes, Search Engine, ETL, Pre-Compute Mapping List, PSA, Data Lake...
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Jun 12, 2025Jun 12, 2025

    • pandas-genomics

      Public
      Pandas ExtensionDtypes for dealing with genomics data
      genomics-datapandas-extensiondtypes
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•48•9•0•Updated May 29, 2025May 29, 2025

    • HallLab.github.io

      Public
      Hall Lab Website
      HTML
      •
      MIT License
      •17k•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • pbs_igem

      Public
      Paper do PBS about IGEM
      Jupyter Notebook
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • dockstore-PharmCAP

      Public
      WDL
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • ldasimulations

      Public
      R
      •0•1•0•0•Updated Mar 27, 2024Mar 27, 2024

    • IGEM_Lite

      Public
      IGEM client version for genomics and exposome analysis, quantity data control, and associations using regression models. Explore associations, run analyses, and…
      Python
      •0•1•0•0•Updated Feb 26, 2024Feb 26, 2024

    • IGEM_Support

      Public
      This repository stores GE.db Client base update files, analyzes and scripts performed with IGEM.
      Python
      •0•0•0•0•Updated Dec 4, 2023Dec 4, 2023

    • exe_interactions

      Public
      0•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • filed

      Public
      old versions of programs and projects
      Jupyter Notebook
      •0•0•0•0•Updated Dec 27, 2022Dec 27, 2022

    • ADNI_project

      Public
      Sex difference analysis on AD metabolome
      metabolomicsadnialzheimer-disease
      Python
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Apr 7, 2022Apr 7, 2022

    • PLOS_Genetics_EDGE_Paper

      Public
      Scripts and results for simulated data
      Shell
      •0•0•0•0•Updated Apr 20, 2021Apr 20, 2021

    • clarite-gui

      Public
      A GUI Version of CLARITE
      Python
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Mar 16, 2021Mar 16, 2021

    • MTBLS374_smoking_study_secondary_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 20, 2021Jan 20, 2021

    • paper_2020_tpot_actg

      Public
      Scripts for "Automated machine learning for rare variant analysis of response to antiretroviral therapy in persons living with HIV"
      Python
      •0•1•0•0•Updated Jan 6, 2021Jan 6, 2021

    • clarite

      Public
      R
      •1•3•5•0•Updated Oct 26, 2020Oct 26, 2020

    • RNHANES

      Public
      R package for accessing and analyzing CDC NHANES data
      R
      •
      Apache License 2.0
      •13•1•0•0•Updated Apr 22, 2019Apr 22, 2019