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    35 repositories

    • MFD

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 11, 2024Sep 11, 2024

    • Math4ML-Code

      Public
      Python Code for the Mathematics for Machine Learning Lecture
      Jupyter Notebook
      •0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

    • transfer-gwas-brain-mri

      Public
      0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • neurocor

      Public
      A repository to calculate genetic correlations with brain imaging phenotypes
      Python
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • Deep-Learning-Lecture

      Public
      HPI Deep Learning Lecture
      Creative Commons Zero v1.0 Universal
      •3•12•1•0•Updated Jul 3, 2023Jul 3, 2023

    • seak

      Public
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Apr 18, 2023Apr 18, 2023

    • faatpipe

      Public
      Functional Annotation and Association Testing Pipeline
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Apr 18, 2023Apr 18, 2023

    • AntiSplodge

      Public
      Spatial Transcriptomics deconvolution pipeline
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Dec 1, 2022Dec 1, 2022

    • lucid-torch

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•3•Updated Nov 22, 2022Nov 22, 2022

    • ukb-200k-wes-vep

      Public
      UK Biobank 200k whole exome sequencing variant effect predictions
      0•6•0•0•Updated Jul 27, 2022Jul 27, 2022

    • ContIG

      Public
      This is the official implementation of the method ContIG, for self-supervised learning from medical imaging with genomics
      Python
      •
      Apache License 2.0
      •6•50•1•0•Updated Jul 7, 2022Jul 7, 2022

    • active-segmentation

      Public
      ActiveSegmentation: A Simulation Framework for Benchmarking Active Learning Strategies for 3D Medical Image Segmentation
      deep-learningpytorchmedical-imagingsemantic-segmentationactive-learningmedical-image-segmentationpytorch-lightning3d-image-segmentation
      Python
      •
      GNU Affero General Public License v3.0
      •1•16•9•0•Updated Jul 5, 2022Jul 5, 2022

    • AntiSplodge_Turorial

      Public
      Tutorial for AntiSplodge with all the required datasets to get going!
      Jupyter Notebook
      •0•0•0•0•Updated Jun 30, 2022Jun 30, 2022

    • self-supervised-3d-tasks

      Public
      Python
      •
      Apache License 2.0
      •40•187•1•0•Updated Mar 3, 2022Mar 3, 2022

    • StyleGAN2-Hypotheses-Explorer

      Public
      Implementation of the interactive framework from the paper "Explainability Requires Interactivity". See https://github.com/HealthML/explainability-requires-interactivity for the code to reproduce experiments from the paper.
      Python
      •
      MIT License
      •0•4•0•0•Updated Sep 17, 2021Sep 17, 2021

    • explainability-requires-interactivity

      Public
      Code to reproduce experiments in the paper "Explainability Requires Interactivity". See https://github.com/HealthML/StyleGAN2-Hypotheses-Explorer/ for the implementation of the interactive framework.
      Python
      •
      MIT License
      •2•5•0•0•Updated Sep 17, 2021Sep 17, 2021

    • Math4ML-Lecture

      Public
      HPI Mathematics for Machine Learning Lecture
      1•4•0•0•Updated Feb 10, 2021Feb 10, 2021

    • spectral

      Public
      A jekyll theme for the spectral template by html5up.net (@ajlkn). Demo: http://arkadianriver.github.io/spectral. How to jekyll: http://jekyllrb.com/docs/home/. If you intend to use this theme as a blog site with more than a few pages, have a look at my fork at https://github.com/arkadianriver/arkadianriver.com
      CSS
      •
      Other
      •396•0•0•0•Updated Jan 24, 2021Jan 24, 2021

    • Nextflow-pipeline

      Public
      The pipeline for analyzing the UKBiobank data, with variant annotation tool VEP and some in-house tools
      Shell
      •0•0•0•0•Updated Aug 31, 2020Aug 31, 2020

    • pathology-ml-model-training

      Public
      A tool to enable biologists to train a machine learning model for their pathology images.
      C++
      •
      MIT License
      •1•0•0•0•Updated May 12, 2020May 12, 2020

    • d2l-en

      Public
      Dive into Deep Learning, Berkeley STAT 157 (Spring 2019) textbook. With code, math, and discussions.
      Python
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      Other
      •4.3k•0•0•0•Updated Apr 19, 2020Apr 19, 2020

    • FaST-LMM

      Public
      Python version of Factored Spectrally Transformed Linear Mixed Models
      Python
      •
      Apache License 2.0
      •46•0•0•0•Updated Dec 5, 2019Dec 5, 2019

    • gadgetron

      Public
      Gadgetron - Medical Image Reconstruction Framework
      C++
      •
      Other
      •164•0•0•0•Updated Oct 14, 2019Oct 14, 2019

    • STATS331

      Public
      Lecture notes for an introductory undergraduate course in Bayesian Inference
      TeX
      •
      MIT License
      •8•0•0•0•Updated Sep 10, 2019Sep 10, 2019

    • manim

      Public
      Animation engine for explanatory math videos
      Python
      •
      Other
      •6.1k•0•0•0•Updated Jun 9, 2019Jun 9, 2019

    • math4ml

      Public
      Notes on mathematical topics that pertain to machine learning
      TeX
      •20•0•0•0•Updated Mar 18, 2019Mar 18, 2019

    • mml-book.github.io

      Public
      Companion webpage to the book "Mathematics For Machine Learning"
      2.4k•0•0•0•Updated Mar 17, 2019Mar 17, 2019

    • deep-learning-notes

      Public
      My CS231n lecture notes
      TeX
      •68•0•0•0•Updated Aug 10, 2018Aug 10, 2018

    • AdaScreen

      Public
      AdaScreen - Ensembles of Screening Rules
      Python
      •
      MIT License
      •4•0•0•0•Updated May 24, 2018May 24, 2018

    • PySnpTools

      Public
      A Python library for reading and manipulating genetic data.
      Python
      •
      Apache License 2.0
      •14•0•0•0•Updated May 11, 2018May 11, 2018