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WADE v1.1.1
Updates:
EMM - add comment "Full match to bad allele" if there's a 100% match to a bad allele and no match to an acceptable emm allele.
EMM2 - ensure files are saved in the correct location
LabwareUpload_GAS_TOXINS - remove sagA from toxin profile. Change "Susceptible" to "No Toxins Found"
LabwareUpload_GONO_AMR - update error calling for penicillin resistance detection
-Updated the following AMR prediction algorithms for gonorrhoeae: ciprofloxacin, penicillin, tetracycline
LabwareUpload_PNEUMO_AMR - Updated how ermB is recorded to ensure that ery, azi, cla, and cli are correctly predicted
WADE - removed "UpdateLookups" function, as pubMLST has changed their security settings and it is no longer function. Lookups can be updated by downloading from wade-data or pubMLST directly